RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 PDZD11Q5EBL8 140 aa11.89□□□□□ -0.51
LIG1-216ENST00000598938 C15orf56Q8N910 161 aa11.89□□□□□ -0.51
LIG1-216ENST00000598938 C2orf88Q9BSF0 95 aa11.89□□□□□ -0.51
LIG1-216ENST00000598938 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.88□□□□□ -0.51
LIG1-216ENST00000598938 PRSS1P07477 247 aa11.88□□□□□ -0.51
LIG1-216ENST00000598938 UBE2D1P51668 147 aa11.88□□□□□ -0.51
LIG1-216ENST00000598938 IGLV5-52A0A0A0MRZ9 124 aa11.87□□□□□ -0.51
LIG1-216ENST00000598938 LINC00310P59036 64 aa11.87□□□□□ -0.51
LIG1-216ENST00000598938 CFAP161Q6P656 301 aa11.87□□□□□ -0.51
LIG1-216ENST00000598938 FAM19A3Q7Z5A8 133 aa11.87□□□□□ -0.51
LIG1-216ENST00000598938 IGHV3OR16-9A0A0B4J2B5 98 aa11.86□□□□□ -0.51
LIG1-216ENST00000598938 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.86□□□□□ -0.51
LIG1-216ENST00000598938 COX7A2LO14548 114 aa11.86□□□□□ -0.51
LIG1-216ENST00000598938 LINC00242Q5T6M2 205 aa11.86□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BKO60814 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HSBP1O75506 76 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 SERF1AO75920 110 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BJP06899 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BOP23527 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BBP33778 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BDP58876 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BCP62807 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST2H2BEQ16778 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BHQ93079 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BNQ99877 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 HIST1H2BMQ99879 126 aa11.85□□□□□ -0.51
LIG1-216ENST00000598938 IGHV1-58A0A0C4DH39 117 aa11.84□□□□□ -0.51
LIG1-216ENST00000598938 EPM2AB3EWF7 344 aa11.84□□□□□ -0.51
LIG1-216ENST00000598938 COX6A2Q02221 97 aa11.84□□□□□ -0.51
LIG1-216ENST00000598938 C5orf38Q86SI9 138 aa11.84□□□□□ -0.51
LIG1-216ENST00000598938 GVQW2A0A096LPI5 108 aaPredicted RBP11.83□□□□□ -0.52
LIG1-216ENST00000598938 hDV102S1A0JD36 115 aa11.83□□□□□ -0.52
LIG1-216ENST00000598938 ATP5LO75964 103 aa11.83□□□□□ -0.52
LIG1-216ENST00000598938 PMVKQ15126 192 aa11.83□□□□□ -0.52
LIG1-216ENST00000598938 CST9LQ9H4G1 147 aa11.83□□□□□ -0.52
LIG1-216ENST00000598938 DNAH8Q96JB1 4490 aa11.83□□□□□ -0.52
LIG1-216ENST00000598938 MALP21145 153 aa11.82□□□□□ -0.52
LIG1-216ENST00000598938 GCSHP23434 173 aa11.82□□□□□ -0.52
LIG1-216ENST00000598938 HIGD2BQ4VC39 106 aa11.82□□□□□ -0.52
LIG1-216ENST00000598938 FAM19A2Q8N3H0 131 aa11.82□□□□□ -0.52
LIG1-216ENST00000598938 NUPR1O60356 82 aa11.81□□□□□ -0.52
LIG1-216ENST00000598938 CNBPP62633 177 aaKnown RBP11.81□□□□□ -0.52
LIG1-216ENST00000598938 A0A087WZ39 114 aa11.8□□□□□ -0.52
LIG1-216ENST00000598938 A0A0J9YXV3 536 aa11.8□□□□□ -0.52
LIG1-216ENST00000598938 SEC11AP67812 179 aa11.8□□□□□ -0.52
LIG1-216ENST00000598938 APOMO95445 188 aa11.79□□□□□ -0.52
LIG1-216ENST00000598938 SLPIP03973 132 aa11.79□□□□□ -0.52
LIG1-216ENST00000598938 INAFM2P0DMQ5 153 aa11.79□□□□□ -0.52
LIG1-216ENST00000598938 KRTAP10-1P60331 282 aa11.79□□□□□ -0.52
LIG1-216ENST00000598938 HERVK_113P63121 156 aa11.79□□□□□ -0.52
LIG1-216ENST00000598938 IGHV3-64A0A075B6Q5 118 aa11.78□□□□□ -0.52
LIG1-216ENST00000598938 TINCRA0A1B0GVN0 87 aa11.78□□□□□ -0.52
LIG1-216ENST00000598938 LINC01561Q8N1V8 128 aa11.78□□□□□ -0.52
LIG1-216ENST00000598938 OR10D4PQ8NGN7 298 aa11.77□□□□□ -0.53
LIG1-216ENST00000598938 IFI27L1Q96BM0 104 aa11.77□□□□□ -0.53
LIG1-216ENST00000598938 GEMIN7Q9H840 131 aaKnown RBP11.77□□□□□ -0.53
LIG1-216ENST00000598938 NDUFA6P56556 154 aa11.76□□□□□ -0.53
LIG1-216ENST00000598938 C9orf163Q8N9P6 203 aa11.76□□□□□ -0.53
LIG1-216ENST00000598938 IGLV5-45A0A087WSX0 123 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.75□□□□□ -0.53
LIG1-216ENST00000598938 ZNF561-AS1K7EIQ3 104 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 LEPROTL1O95214 131 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 LINC01620Q4KN68 170 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 COA6Q5JTJ3 125 aaKnown RBP11.75□□□□□ -0.53
LIG1-216ENST00000598938 ORAOV1Q8WV07 137 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 LINC00526Q96FQ7 95 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 CDKN2A-AS1Q9UH64 79 aa11.75□□□□□ -0.53
LIG1-216ENST00000598938 IGLV4-69A0A075B6H9 119 aa11.74□□□□□ -0.53
LIG1-216ENST00000598938 TRAV12-1A0A0B4J245 112 aa11.74□□□□□ -0.53
LIG1-216ENST00000598938 IGLC3P0DOY3 106 aa11.74□□□□□ -0.53
LIG1-216ENST00000598938 SPAG11BQ08648 103 aa11.74□□□□□ -0.53
LIG1-216ENST00000598938 LINC00469Q8N7U9 141 aa11.73□□□□□ -0.53
LIG1-216ENST00000598938 C2orf48Q96LS8 159 aa11.73□□□□□ -0.53
LIG1-216ENST00000598938 CHAC1Q9BUX1 264 aa11.72□□□□□ -0.53
LIG1-216ENST00000598938 KIAA0087Q14695 138 aa11.71□□□□□ -0.53
LIG1-216ENST00000598938 Q5VSD8 79 aa11.71□□□□□ -0.53
LIG1-216ENST00000598938 HSPB8Q9UJY1 196 aa11.71□□□□□ -0.53
LIG1-216ENST00000598938 FABP4P15090 132 aa11.7□□□□□ -0.54
LIG1-216ENST00000598938 SYCNQ0VAF6 134 aa11.7□□□□□ -0.54
LIG1-216ENST00000598938 SDIM1Q6ZPB5 146 aa11.7□□□□□ -0.54
LIG1-216ENST00000598938 Q6ZSA8 131 aa11.7□□□□□ -0.54
LIG1-216ENST00000598938 CARD19Q96LW7 228 aa11.7□□□□□ -0.54
LIG1-216ENST00000598938 CHTOPQ9Y3Y2 248 aaKnown RBP11.7□□□□□ -0.54
LIG1-216ENST00000598938 MYCBP2O75592 4640 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 SMIM1B2RUZ4 78 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 F8WDY8 70 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 XGP55808 180 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 PACRGQ96M98 296 aaPredicted RBP11.69□□□□□ -0.54
LIG1-216ENST00000598938 CAMK2N2Q96S95 79 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 FAM30AQ9NZY2 134 aa11.69□□□□□ -0.54
LIG1-216ENST00000598938 C11orf86A6NJI1 115 aa11.68□□□□□ -0.54
LIG1-216ENST00000598938 ZNF22P17026 224 aaPredicted RBP11.68□□□□□ -0.54
LIG1-216ENST00000598938 Q6ZRU5 148 aa11.68□□□□□ -0.54
LIG1-216ENST00000598938 F8VRH5 84 aa11.67□□□□□ -0.54
LIG1-216ENST00000598938 H3BRM9 83 aa11.67□□□□□ -0.54
LIG1-216ENST00000598938 ODF1Q14990 250 aa11.67□□□□□ -0.54
LIG1-216ENST00000598938 MRPL35Q9NZE8 188 aaKnown RBP11.67□□□□□ -0.54
LIG1-216ENST00000598938 Q8IZM0 81 aa11.66□□□□□ -0.54
LIG1-216ENST00000598938 SRRM2Q9UQ35 2752 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms