RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 A0A087WVE0 104 aa11.03□□□□□ -0.64
UPF1-204ENST00000596842 RPL35AP18077 110 aaKnown RBP11.03□□□□□ -0.64
UPF1-204ENST00000596842 Q9HAA7 133 aa11.03□□□□□ -0.64
UPF1-204ENST00000596842 TRBV30A0A0K0K1B3 111 aa11.03□□□□□ -0.64
UPF1-204ENST00000596842 BAALC-AS2P0C853 105 aa11.02□□□□□ -0.64
UPF1-204ENST00000596842 Q6ZTI0 123 aa11.02□□□□□ -0.65
UPF1-204ENST00000596842 KRTAP10-9P60411 292 aa11.02□□□□□ -0.65
UPF1-204ENST00000596842 GCN1Q92616 2671 aaKnown RBP11.02□□□□□ -0.65
UPF1-204ENST00000596842 TMEM89A2RUT3 159 aa11.01□□□□□ -0.65
UPF1-204ENST00000596842 C11orf68Q9H3H3 251 aaKnown RBP11.01□□□□□ -0.65
UPF1-204ENST00000596842 PIK3CD-AS1Q5SR53 167 aa11.01□□□□□ -0.65
UPF1-204ENST00000596842 NOP10Q9NPE3 64 aaKnown RBP11□□□□□ -0.65
UPF1-204ENST00000596842 Q6Q795 121 aa11□□□□□ -0.65
UPF1-204ENST00000596842 ITPR3Q14573 2671 aa11□□□□□ -0.65
UPF1-204ENST00000596842 TRGV2A0A075B6R0 118 aa11□□□□□ -0.65
UPF1-204ENST00000596842 UBE2L6O14933 153 aa11□□□□□ -0.65
UPF1-204ENST00000596842 LRRC75A-AS1Q8N1F1 130 aa11□□□□□ -0.65
UPF1-204ENST00000596842 WFDC10AQ9H1F0 79 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 SETXQ7Z333 2677 aaKnown RBP10.99□□□□□ -0.65
UPF1-204ENST00000596842 Q6YL49 198 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 C20orf197Q8N268 126 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 PLA2G2AP14555 144 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 COX7CP15954 63 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 RPL36AP83881 106 aaKnown RBP10.99□□□□□ -0.65
UPF1-204ENST00000596842 RPL36ALQ969Q0 106 aaKnown RBP10.99□□□□□ -0.65
UPF1-204ENST00000596842 TMEM243Q9BU79 118 aa10.99□□□□□ -0.65
UPF1-204ENST00000596842 LINC00308Q8TCZ7 52 aa10.98□□□□□ -0.65
UPF1-204ENST00000596842 SPANXDQ9BXN6 97 aa10.98□□□□□ -0.65
UPF1-204ENST00000596842 SPANXCQ9NY87 97 aa10.98□□□□□ -0.65
UPF1-204ENST00000596842 DAZ2Q13117 558 aaKnown RBP10.97□□□□□ -0.65
UPF1-204ENST00000596842 DEFB114Q30KQ6 69 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 LINC00242Q5T6M2 205 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 DAZ4Q86SG3 579 aaKnown RBP10.97□□□□□ -0.65
UPF1-204ENST00000596842 LINC00643Q86TS7 51 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 Q8N2B8 174 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 DAZ3Q9NR90 486 aaKnown RBP10.97□□□□□ -0.65
UPF1-204ENST00000596842 TRAV23DV6A0A075B6W5 121 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 LOC100131303A0A0U1RQF7 123 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 ATOX1O00244 68 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 DSCR9P59020 149 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 RBM3P98179 157 aaKnown RBP10.97□□□□□ -0.65
UPF1-204ENST00000596842 C11orf72Q8NBR9 251 aa10.97□□□□□ -0.65
UPF1-204ENST00000596842 Q96MF0 132 aa10.96□□□□□ -0.65
UPF1-204ENST00000596842 IGHV4-31P0DP07 118 aa10.96□□□□□ -0.66
UPF1-204ENST00000596842 LST1O00453 97 aa10.95□□□□□ -0.66
UPF1-204ENST00000596842 WFDC9Q8NEX5 89 aa10.95□□□□□ -0.66
UPF1-204ENST00000596842 LINC00526Q96FQ7 95 aa10.95□□□□□ -0.66
UPF1-204ENST00000596842 ODF3L2Q3SX64 289 aa10.95□□□□□ -0.66
UPF1-204ENST00000596842 H3BT86 120 aa10.95□□□□□ -0.66
UPF1-204ENST00000596842 USP24Q9UPU5 2620 aa10.94□□□□□ -0.66
UPF1-204ENST00000596842 C14orf132Q9NPU4 83 aa10.94□□□□□ -0.66
UPF1-204ENST00000596842 ZNF469Q96JG9 3925 aaPredicted RBP10.94□□□□□ -0.66
UPF1-204ENST00000596842 PFN2P35080 140 aa10.94□□□□□ -0.66
UPF1-204ENST00000596842 SOSTDC1Q6X4U4 206 aa10.94□□□□□ -0.66
UPF1-204ENST00000596842 NDUFA1O15239 70 aa10.93□□□□□ -0.66
UPF1-204ENST00000596842 C1orf158Q8N1D5 194 aa10.93□□□□□ -0.66
UPF1-204ENST00000596842 MPLKIPQ8TAP9 179 aa10.93□□□□□ -0.66
UPF1-204ENST00000596842 LINC00158P58513 81 aa10.93□□□□□ -0.66
UPF1-204ENST00000596842 FAM236DA0A1B0GTK5 79 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 J3QLI3 93 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 FAM236CP0DP71 79 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 NTM-AS1Q6ZSK4 140 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 SMIM1B2RUZ4 78 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 K7EQD1 137 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 PRB2P02812 416 aaPredicted RBP10.92□□□□□ -0.66
UPF1-204ENST00000596842 AKAP9Q99996 3911 aa10.92□□□□□ -0.66
UPF1-204ENST00000596842 TRGV4A0A0C4DH28 118 aa10.91□□□□□ -0.66
UPF1-204ENST00000596842 APCP25054 2843 aa10.91□□□□□ -0.66
UPF1-204ENST00000596842 CLPSL2Q6UWE3 100 aa10.9□□□□□ -0.66
UPF1-204ENST00000596842 C5orf38Q86SI9 138 aa10.9□□□□□ -0.66
UPF1-204ENST00000596842 C4orf3Q8WVX3 66 aa10.9□□□□□ -0.66
UPF1-204ENST00000596842 A0A096LPF7 62 aa10.9□□□□□ -0.67
UPF1-204ENST00000596842 DEFB130BP0DP73 79 aa10.9□□□□□ -0.67
UPF1-204ENST00000596842 DEFB130AP0DP74 79 aa10.9□□□□□ -0.67
UPF1-204ENST00000596842 TIRAPP58753 221 aa10.89□□□□□ -0.67
UPF1-204ENST00000596842 MIR7-3HGQ8N6C7 128 aa10.89□□□□□ -0.67
UPF1-204ENST00000596842 V9GYY9 64 aa10.89□□□□□ -0.67
UPF1-204ENST00000596842 CCL24O00175 119 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 ATP5G1P05496 136 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 ACYP1P07311 99 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 INAFM2P0DMQ5 153 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 HIST2H2BCQ6DN03 193 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 GHRHP01286 108 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 DPH3Q96FX2 82 aa10.88□□□□□ -0.67
UPF1-204ENST00000596842 A0A096LNT2 108 aa10.87□□□□□ -0.67
UPF1-204ENST00000596842 COX7A2LO14548 114 aa10.87□□□□□ -0.67
UPF1-204ENST00000596842 CRPP02741 224 aa10.87□□□□□ -0.67
UPF1-204ENST00000596842 BEAN1Q3B7T3 259 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 CDC42SE2Q9NRR3 84 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 HAMPP81172 84 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 FAM218AQ96MZ4 157 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 CR1P17927 2039 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 USP17L23D6RBM5 183 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 SNURFQ9Y675 71 aa10.86□□□□□ -0.67
UPF1-204ENST00000596842 PAX4O43316 350 aa10.85□□□□□ -0.67
UPF1-204ENST00000596842 SND1-IT1Q9HBX3 110 aa10.84□□□□□ -0.67
UPF1-204ENST00000596842 TIMM17BO60830 172 aa10.84□□□□□ -0.67
UPF1-204ENST00000596842 SLPIP03973 132 aa10.84□□□□□ -0.67
UPF1-204ENST00000596842 TMEM258P61165 79 aa10.84□□□□□ -0.67
UPF1-204ENST00000596842 SEC61GP60059 68 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms