RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 STPG4Q8N801 248 aa13.57□□□□□ -0.24
ATG4D-208ENST00000588667 A0A1B0GUV1 79 aa13.56□□□□□ -0.24
ATG4D-208ENST00000588667 C11orf86A6NJI1 115 aa13.56□□□□□ -0.24
ATG4D-208ENST00000588667 IGLC3P0DOY3 106 aa13.56□□□□□ -0.24
ATG4D-208ENST00000588667 PCP4L1A6NKN8 68 aa13.55□□□□□ -0.24
ATG4D-208ENST00000588667 CHAC1Q9BUX1 264 aa13.55□□□□□ -0.24
ATG4D-208ENST00000588667 A0A0J9YXV3 536 aa13.54□□□□□ -0.24
ATG4D-208ENST00000588667 Q6ZRN7 208 aaPredicted RBP13.54□□□□□ -0.24
ATG4D-208ENST00000588667 HECTD4Q9Y4D8 3996 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 UBE2D1P51668 147 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 ANKRD39Q53RE8 183 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 IGLV4-60A0A075B6I1 120 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 RBX1P62877 108 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 MPV17L2Q567V2 206 aa13.53□□□□□ -0.24
ATG4D-208ENST00000588667 EPPK1P58107 5090 aaKnown RBP13.53□□□□□ -0.24
ATG4D-208ENST00000588667 TINCRA0A1B0GVN0 87 aa13.52□□□□□ -0.25
ATG4D-208ENST00000588667 SEC11AP67812 179 aa13.52□□□□□ -0.25
ATG4D-208ENST00000588667 TMEM170BQ5T4T1 132 aa13.52□□□□□ -0.25
ATG4D-208ENST00000588667 HERVK_113P61574 105 aa13.51□□□□□ -0.25
ATG4D-208ENST00000588667 TNP2Q05952 138 aa13.51□□□□□ -0.25
ATG4D-208ENST00000588667 C14orf144Q96I85 54 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 GEMIN7Q9H840 131 aaKnown RBP13.5□□□□□ -0.25
ATG4D-208ENST00000588667 Q9HAA7 133 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 UQCR10Q9UDW1 63 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 KLK12Q9UKR0 248 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 TRAV8-3A0A0A6YYJ7 113 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 TRAV13-1A0A0B4J241 112 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 FAM19A3Q7Z5A8 133 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 MIEN1Q9BRT3 115 aa13.5□□□□□ -0.25
ATG4D-208ENST00000588667 A0A1B0GVY2 172 aa13.48□□□□□ -0.25
ATG4D-208ENST00000588667 ZNF22P17026 224 aaPredicted RBP13.48□□□□□ -0.25
ATG4D-208ENST00000588667 NMUP48645 174 aa13.48□□□□□ -0.25
ATG4D-208ENST00000588667 HERVK_113P63121 156 aa13.48□□□□□ -0.25
ATG4D-208ENST00000588667 ANGP03950 147 aaKnown RBP13.47□□□□□ -0.25
ATG4D-208ENST00000588667 COX8AP10176 69 aa13.47□□□□□ -0.25
ATG4D-208ENST00000588667 DDTP30046 118 aa13.47□□□□□ -0.25
ATG4D-208ENST00000588667 LINC00242Q5T6M2 205 aa13.47□□□□□ -0.25
ATG4D-208ENST00000588667 PKD1P98161 4303 aa13.46□□□□□ -0.25
ATG4D-208ENST00000588667 E9PLD3 99 aa13.46□□□□□ -0.25
ATG4D-208ENST00000588667 SLC25A34Q6PIV7 304 aa13.46□□□□□ -0.25
ATG4D-208ENST00000588667 LINC00469Q8N7U9 141 aa13.46□□□□□ -0.26
ATG4D-208ENST00000588667 UBE2WQ96B02 151 aa13.46□□□□□ -0.26
ATG4D-208ENST00000588667 PKHD1P08F94 4074 aa13.45□□□□□ -0.26
ATG4D-208ENST00000588667 IGKV2D-26A0A0A0MRZ7 120 aa13.45□□□□□ -0.26
ATG4D-208ENST00000588667 IGKV3OR2-268A0A0C4DH90 116 aa13.45□□□□□ -0.26
ATG4D-208ENST00000588667 IGLV5-45A0A087WSX0 123 aa13.44□□□□□ -0.26
ATG4D-208ENST00000588667 TMEM223A0PJW6 202 aa13.44□□□□□ -0.26
ATG4D-208ENST00000588667 H3BRM9 83 aa13.44□□□□□ -0.26
ATG4D-208ENST00000588667 PSCAO43653 123 aa13.44□□□□□ -0.26
ATG4D-208ENST00000588667 TM2D2Q9BX73 214 aa13.44□□□□□ -0.26
ATG4D-208ENST00000588667 CRPP02741 224 aa13.43□□□□□ -0.26
ATG4D-208ENST00000588667 RMI2Q96E14 147 aa13.43□□□□□ -0.26
ATG4D-208ENST00000588667 LINC00959A0A1B0GUT2 108 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 CCL25O15444 150 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 LINC00269Q8N2A0 174 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 DLEU1O43261 78 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 SS18Q15532 418 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 ENHOQ6UWT2 76 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 BOD1L2Q8IYS8 172 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 PRR34Q9NV39 138 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 CDKN2A-AS1Q9UH64 79 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 COX11Q9Y6N1 276 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 DNAH11Q96DT5 4516 aa13.42□□□□□ -0.26
ATG4D-208ENST00000588667 COX6A2Q02221 97 aa13.41□□□□□ -0.26
ATG4D-208ENST00000588667 PCP2Q8IVA1 136 aa13.41□□□□□ -0.26
ATG4D-208ENST00000588667 HNRNPA3P51991 378 aaKnown RBP13.4□□□□□ -0.26
ATG4D-208ENST00000588667 REG3AQ06141 175 aa13.4□□□□□ -0.26
ATG4D-208ENST00000588667 IGKV2D-24A0A075B6R9 120 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 MIAQ16674 131 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 CLPSL2Q6UWE3 100 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 A0A087WTM6 91 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 LEPROTO15243 131 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 PLEKHB2Q96CS7 222 aa13.39□□□□□ -0.27
ATG4D-208ENST00000588667 IGHV1-58A0A0C4DH39 117 aa13.38□□□□□ -0.27
ATG4D-208ENST00000588667 EREGO14944 169 aa13.38□□□□□ -0.27
ATG4D-208ENST00000588667 C1orf43Q9BWL3 253 aa13.38□□□□□ -0.27
ATG4D-208ENST00000588667 IGHV3-64A0A075B6Q5 118 aa13.36□□□□□ -0.27
ATG4D-208ENST00000588667 J3QQQ9 107 aa13.36□□□□□ -0.27
ATG4D-208ENST00000588667 SPINK8P0C7L1 97 aa13.36□□□□□ -0.27
ATG4D-208ENST00000588667 LGALS3P17931 250 aaKnown RBP13.36□□□□□ -0.27
ATG4D-208ENST00000588667 TP73-AS1Q9UF72 201 aa13.36□□□□□ -0.27
ATG4D-208ENST00000588667 LRCOL1A6NCL2 159 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 LINC00587B1AMM8 73 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 TTTY13Q9BZ97 58 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 IGHV3OR16-9A0A0B4J2B5 98 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 MYMXA0A1B0GTQ4 84 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 MAPKAPK5-AS1Q8N8E1 139 aa13.35□□□□□ -0.27
ATG4D-208ENST00000588667 BIRC6Q9NR09 4857 aa13.34□□□□□ -0.27
ATG4D-208ENST00000588667 XCL1P47992 114 aa13.34□□□□□ -0.27
ATG4D-208ENST00000588667 ZNF815PA8K554 130 aa13.33□□□□□ -0.28
ATG4D-208ENST00000588667 SMIM1B2RUZ4 78 aa13.33□□□□□ -0.28
ATG4D-208ENST00000588667 TSPEAR-AS2P59090 65 aa13.33□□□□□ -0.28
ATG4D-208ENST00000588667 CHCHD10Q8WYQ3 142 aaPredicted RBP13.33□□□□□ -0.28
ATG4D-208ENST00000588667 A0A087WZ39 114 aa13.32□□□□□ -0.28
ATG4D-208ENST00000588667 TRAV8-4A0A0B4J246 113 aa13.32□□□□□ -0.28
ATG4D-208ENST00000588667 IGLV5-39A0A0G2JS06 123 aa13.32□□□□□ -0.28
ATG4D-208ENST00000588667 CD164L2Q6UWJ8 174 aa13.32□□□□□ -0.28
ATG4D-208ENST00000588667 CTAG1AP78358 180 aa13.31□□□□□ -0.28
ATG4D-208ENST00000588667 C2orf91Q6ZV80 131 aa13.31□□□□□ -0.28
ATG4D-208ENST00000588667 KRTAP10-2P60368 255 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms