RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 OCC1Q8TAD7 63 aa7.48□□□□□ -1.21
SS18-219ENST00000581570 TYMSOSQ8TAI1 123 aa7.48□□□□□ -1.21
SS18-219ENST00000581570 A0A087X002 238 aa7.47□□□□□ -1.21
SS18-219ENST00000581570 KANTRA0A1W2PQU2 76 aa7.47□□□□□ -1.21
SS18-219ENST00000581570 TEX46H3BTG2 121 aa7.47□□□□□ -1.21
SS18-219ENST00000581570 K7EN84 100 aa7.47□□□□□ -1.21
SS18-219ENST00000581570 CRCT1Q9UGL9 99 aa7.47□□□□□ -1.21
SS18-219ENST00000581570 GATCO43716 136 aaKnown RBP7.46□□□□□ -1.22
SS18-219ENST00000581570 RETNLBQ9BQ08 111 aa7.46□□□□□ -1.22
SS18-219ENST00000581570 IGHV3OR16-9A0A0B4J2B5 98 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 A8MWL6 223 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 CRYGAP11844 174 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 RAB4AP20338 218 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 BORCS7Q96B45 105 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 TIMM21Q9BVV7 248 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 TMEM191AQ9H0A3 160 aa7.45□□□□□ -1.22
SS18-219ENST00000581570 NUPR1O60356 82 aa7.44□□□□□ -1.22
SS18-219ENST00000581570 TPRXLQ17RH7 258 aa7.44□□□□□ -1.22
SS18-219ENST00000581570 C9orf129Q5T035 196 aaKnown RBP7.44□□□□□ -1.22
SS18-219ENST00000581570 TMEM18Q96B42 140 aa7.44□□□□□ -1.22
SS18-219ENST00000581570 KIR2DL4Q99706 377 aa7.44□□□□□ -1.22
SS18-219ENST00000581570 SMKR1H3BMG3 65 aa7.43□□□□□ -1.22
SS18-219ENST00000581570 AMN1Q8IY45 258 aa7.43□□□□□ -1.22
SS18-219ENST00000581570 CTDSP1Q9GZU7 261 aa7.43□□□□□ -1.22
SS18-219ENST00000581570 IGLV7-46A0A075B6I9 117 aa7.42□□□□□ -1.22
SS18-219ENST00000581570 HMSDA8MTL9 139 aa7.42□□□□□ -1.22
SS18-219ENST00000581570 NDUFC2-KCTD14E9PQ53 114 aa7.42□□□□□ -1.22
SS18-219ENST00000581570 SUMO2P61956 95 aaKnown RBP7.42□□□□□ -1.22
SS18-219ENST00000581570 KIAA0087Q14695 138 aa7.42□□□□□ -1.22
SS18-219ENST00000581570 TRBV30A0A0K0K1B3 111 aa7.41□□□□□ -1.22
SS18-219ENST00000581570 A0A1B0GUT8 65 aa7.41□□□□□ -1.22
SS18-219ENST00000581570 PPP1R17O96001 155 aa7.41□□□□□ -1.22
SS18-219ENST00000581570 FAM231DQ6ZW35 169 aa7.41□□□□□ -1.22
SS18-219ENST00000581570 PACRGQ96M98 296 aaPredicted RBP7.41□□□□□ -1.22
SS18-219ENST00000581570 C22orf24Q9Y442 160 aa7.41□□□□□ -1.22
SS18-219ENST00000581570 RPL28P46779 137 aaKnown RBP7.4□□□□□ -1.22
SS18-219ENST00000581570 LBHQ53QV2 105 aaPredicted RBP7.4□□□□□ -1.22
SS18-219ENST00000581570 C2orf82Q6UX34 121 aa7.4□□□□□ -1.22
SS18-219ENST00000581570 NRACQ8N912 160 aa7.4□□□□□ -1.22
SS18-219ENST00000581570 FAM104AQ969W3 186 aa7.4□□□□□ -1.22
SS18-219ENST00000581570 ANAPC11Q9NYG5 84 aa7.4□□□□□ -1.22
SS18-219ENST00000581570 TGIF2-C20orf24A0A0A6YYL0 155 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 IFITM10A6NMD0 228 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 HIGD1CA8MV81 97 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 PPP1R2P9O14990 202 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 LINC01547P58512 204 aaPredicted RBP7.39□□□□□ -1.23
SS18-219ENST00000581570 RPL39P62891 51 aaKnown RBP7.39□□□□□ -1.23
SS18-219ENST00000581570 CT83Q5H943 113 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 LINC00173Q6ZV60 143 aa7.39□□□□□ -1.23
SS18-219ENST00000581570 TAGLN2P37802 199 aaKnown RBP7.38□□□□□ -1.23
SS18-219ENST00000581570 HBBP68871 147 aa7.38□□□□□ -1.23
SS18-219ENST00000581570 KRTAP13-2Q52LG2 175 aa7.38□□□□□ -1.23
SS18-219ENST00000581570 LINC00304Q8N9R0 145 aa7.38□□□□□ -1.23
SS18-219ENST00000581570 SPANXA1Q9NS26 97 aa7.38□□□□□ -1.23
SS18-219ENST00000581570 BCE1O60756 84 aa7.37□□□□□ -1.23
SS18-219ENST00000581570 MRPS36P82909 103 aaKnown RBP7.37□□□□□ -1.23
SS18-219ENST00000581570 KRTAP4-8Q9BYQ9 185 aa7.37□□□□□ -1.23
SS18-219ENST00000581570 ZNF727A8MUV8 499 aa7.36□□□□□ -1.23
SS18-219ENST00000581570 TCAPO15273 167 aa7.36□□□□□ -1.23
SS18-219ENST00000581570 LINC00469Q8N7U9 141 aa7.36□□□□□ -1.23
SS18-219ENST00000581570 FSIP2Q5CZC0 6907 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 RIGQ13278 110 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 LINC00242Q5T6M2 205 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 C20orf78Q9BR46 151 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 PPDPFQ9H3Y8 114 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 XAGE1AQ9HD64 81 aa7.35□□□□□ -1.23
SS18-219ENST00000581570 MRPL55Q7Z7F7 128 aaKnown RBP7.34□□□□□ -1.23
SS18-219ENST00000581570 RPL32P62910 135 aaKnown RBP7.33□□□□□ -1.24
SS18-219ENST00000581570 FAM229BQ4G0N7 80 aa7.33□□□□□ -1.24
SS18-219ENST00000581570 MRPL51Q4U2R6 128 aaKnown RBP7.33□□□□□ -1.24
SS18-219ENST00000581570 TP73-AS1Q9UF72 201 aa7.33□□□□□ -1.24
SS18-219ENST00000581570 TRBV24-1A0A075B6N3 115 aa7.32□□□□□ -1.24
SS18-219ENST00000581570 LINC00862A6NCI5 91 aa7.32□□□□□ -1.24
SS18-219ENST00000581570 TMEM250H0YL14 139 aa7.32□□□□□ -1.24
SS18-219ENST00000581570 CTAG1AP78358 180 aa7.32□□□□□ -1.24
SS18-219ENST00000581570 FAM104BQ5XKR9 115 aa7.32□□□□□ -1.24
SS18-219ENST00000581570 IGKV2D-26A0A0A0MRZ7 120 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 RPL37AP8A6NKH3 93 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 PRSS2P07478 247 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 CKS2P33552 79 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 CEBPGP53567 150 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 CKS1BP61024 79 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 SRSF3P84103 164 aaKnown RBP7.31□□□□□ -1.24
SS18-219ENST00000581570 LINC01561Q8N1V8 128 aa7.31□□□□□ -1.24
SS18-219ENST00000581570 TNFRSF6BO95407 300 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 IFI27P40305 119 aaPredicted RBP7.3□□□□□ -1.24
SS18-219ENST00000581570 UBE2AP49459 152 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 C6orf226Q5I0X4 101 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 LINC00167Q96N53 147 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 SMIM2Q9BVW6 85 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 OSTCQ9NRP0 149 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 TOMM7Q9P0U1 55 aa7.3□□□□□ -1.24
SS18-219ENST00000581570 RGS21Q2M5E4 152 aa7.29□□□□□ -1.24
SS18-219ENST00000581570 ASB16-AS1Q495Z4 193 aa7.29□□□□□ -1.24
SS18-219ENST00000581570 Q6ZN92 141 aa7.29□□□□□ -1.24
SS18-219ENST00000581570 LINC01551Q86U37 167 aa7.29□□□□□ -1.24
SS18-219ENST00000581570 LINC00337Q8N6G1 96 aa7.29□□□□□ -1.24
SS18-219ENST00000581570 IGLV4-3A0A075B6K6 122 aa7.28□□□□□ -1.24
SS18-219ENST00000581570 KRTAP13-1Q8IUC0 172 aa7.28□□□□□ -1.24
SS18-219ENST00000581570 GAGE10A6NGK3 116 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms