RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LINC00173Q6ZV60 143 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 FAM19A2Q8N3H0 131 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 BAALCQ8WXS3 180 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 CHCHD10Q8WYQ3 142 aaPredicted RBP5.67□□□□□ -1.5
NUP88-211ENST00000575976 AMELXQ99217 191 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 VCX2Q9H322 139 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 DNAH10Q8IVF4 4471 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 DNAH17Q9UFH2 4485 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 LECT2O14960 151 aa5.66□□□□□ -1.5
NUP88-211ENST00000575976 XCL1P47992 114 aa5.66□□□□□ -1.5
NUP88-211ENST00000575976 A0A1B0GVY2 172 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.65□□□□□ -1.5
NUP88-211ENST00000575976 UBE2D1P51668 147 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 NDUFA6P56556 154 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 FOXI1Q12951 378 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 PAPPA-AS1Q5QFB9 102 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 CD164L2Q6UWJ8 174 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 C2orf88Q9BSF0 95 aa5.65□□□□□ -1.5
NUP88-211ENST00000575976 ATP5LO75964 103 aa5.64□□□□□ -1.51
NUP88-211ENST00000575976 COX6A2Q02221 97 aa5.64□□□□□ -1.51
NUP88-211ENST00000575976 PMVKQ15126 192 aa5.64□□□□□ -1.51
NUP88-211ENST00000575976 LINC00242Q5T6M2 205 aa5.64□□□□□ -1.51
NUP88-211ENST00000575976 USP17L23D6RBM5 183 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 EREGO14944 169 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 COA6Q5JTJ3 125 aaKnown RBP5.63□□□□□ -1.51
NUP88-211ENST00000575976 C5orf38Q86SI9 138 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 Q8N814 137 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 IFI27L1Q96BM0 104 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 CST9LQ9H4G1 147 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 HERC1Q15751 4861 aa5.63□□□□□ -1.51
NUP88-211ENST00000575976 IGHV3OR16-9A0A0B4J2B5 98 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 A0A0J9YXV3 536 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 LEPROTL1O95214 131 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 PRSS1P07477 247 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 FABP4P15090 132 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 FUSP35637 526 aaKnown RBP eCLIP5.62□□□□□ -1.51
NUP88-211ENST00000575976 KRTAP10-2P60368 255 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 FAM19A3Q7Z5A8 133 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 SPATA12Q7Z6I5 190 aa5.62□□□□□ -1.51
NUP88-211ENST00000575976 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.61□□□□□ -1.51
NUP88-211ENST00000575976 COX7A2LO14548 114 aa5.61□□□□□ -1.51
NUP88-211ENST00000575976 C15orf56Q8N910 161 aa5.61□□□□□ -1.51
NUP88-211ENST00000575976 KRTAP4-5Q9BYR2 181 aa5.61□□□□□ -1.51
NUP88-211ENST00000575976 CBY1Q9Y3M2 126 aa5.61□□□□□ -1.51
NUP88-211ENST00000575976 FAT2Q9NYQ8 4349 aa5.61□□□□□ -1.51
NUP88-211ENST00000575976 IGHV1-58A0A0C4DH39 117 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 MALP21145 153 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 HERVK_113P63121 156 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 SEC11AP67812 179 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 HIGD2BQ4VC39 106 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 C14orf177Q52M58 125 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 GEMIN7Q9H840 131 aaKnown RBP5.6□□□□□ -1.51
NUP88-211ENST00000575976 PGPEP1Q9NXJ5 209 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 HSPB8Q9UJY1 196 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 UBR4Q5T4S7 5183 aa5.6□□□□□ -1.51
NUP88-211ENST00000575976 IGLV4-69A0A075B6H9 119 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 A0A087WZ39 114 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 TRAV12-1A0A0B4J245 112 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 TINCRA0A1B0GVN0 87 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 hDV102S1A0JD36 115 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 HSBP1L1C9JCN9 74 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 NTN5Q8WTR8 489 aaPredicted RBP5.59□□□□□ -1.51
NUP88-211ENST00000575976 CDKN2A-AS1Q9UH64 79 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 DNAH11Q96DT5 4516 aa5.59□□□□□ -1.51
NUP88-211ENST00000575976 IGHV3-64A0A075B6Q5 118 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 GVQW2A0A096LPI5 108 aaPredicted RBP5.58□□□□□ -1.52
NUP88-211ENST00000575976 IGLV5-52A0A0A0MRZ9 124 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 H0Y8G0 127 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 APOMO95445 188 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 SLPIP03973 132 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 IGLC3P0DOY3 106 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 LINC01561Q8N1V8 128 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 LINC00526Q96FQ7 95 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 PACRGQ96M98 296 aaPredicted RBP5.58□□□□□ -1.52
NUP88-211ENST00000575976 CHAC1Q9BUX1 264 aa5.58□□□□□ -1.52
NUP88-211ENST00000575976 IGLV5-45A0A087WSX0 123 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 C11orf86A6NJI1 115 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 F8VRH5 84 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 ZNF22P17026 224 aaPredicted RBP5.57□□□□□ -1.52
NUP88-211ENST00000575976 CDPF1Q6NVV7 123 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 HIST3H2BBQ8N257 126 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 ORAOV1Q8WV07 137 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 MAP1LC3CQ9BXW4 147 aa5.57□□□□□ -1.52
NUP88-211ENST00000575976 MRPL35Q9NZE8 188 aaKnown RBP5.57□□□□□ -1.52
NUP88-211ENST00000575976 C16orf90A8MZG2 172 aa5.56□□□□□ -1.52
NUP88-211ENST00000575976 ZNF561-AS1K7EIQ3 104 aa5.56□□□□□ -1.52
NUP88-211ENST00000575976 SPINK8P0C7L1 97 aa5.56□□□□□ -1.52
NUP88-211ENST00000575976 SNRPEP62304 92 aaKnown RBP5.56□□□□□ -1.52
NUP88-211ENST00000575976 SPAG11BQ08648 103 aa5.56□□□□□ -1.52
NUP88-211ENST00000575976 OR10D4PQ8NGN7 298 aa5.56□□□□□ -1.52
NUP88-211ENST00000575976 PKD1P98161 4303 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 A4D1N5 150 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 SMIM1B2RUZ4 78 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 SYS1-DBNDD2H3BUS1 97 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 C3orf79P0CE67 100 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 GCSHP23434 173 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 CNBPP62633 177 aaKnown RBP5.55□□□□□ -1.52
NUP88-211ENST00000575976 KIAA0087Q14695 138 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 LINC01620Q4KN68 170 aa5.55□□□□□ -1.52
NUP88-211ENST00000575976 TMEM170BQ5T4T1 132 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms