RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 RNASE2P10153 161 aaKnown RBP2.01□□□□□ -2.09
NUP88-209ENST00000574855 CCL3L1P16619 93 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 ZNF137PP52743 207 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 RHOHQ15669 191 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 KRTAP25-1Q3LHN0 102 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 SPANXN1Q5VSR9 72 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 C10orf113Q5VZT2 155 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 Q8N9L7 120 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 TRGV9Q99603 122 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 NDUFA12Q9UI09 145 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 AHCTF1Q8WYP5 2266 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 FREM1Q5H8C1 2179 aa2□□□□□ -2.09
NUP88-209ENST00000574855 MED13Q9UHV7 2174 aa2□□□□□ -2.09
NUP88-209ENST00000574855 MED12LQ86YW9 2145 aa2□□□□□ -2.09
NUP88-209ENST00000574855 ZDBF2Q9HCK1 2354 aa2□□□□□ -2.09
NUP88-209ENST00000574855 M0R1W7 72 aa2□□□□□ -2.09
NUP88-209ENST00000574855 ATOX1O00244 68 aa2□□□□□ -2.09
NUP88-209ENST00000574855 HINT1P49773 126 aaPredicted RBP2□□□□□ -2.09
NUP88-209ENST00000574855 UBE2G1P62253 170 aa2□□□□□ -2.09
NUP88-209ENST00000574855 Q1T7F1 81 aa2□□□□□ -2.09
NUP88-209ENST00000574855 BAGE2Q86Y30 109 aa2□□□□□ -2.09
NUP88-209ENST00000574855 TMEM141Q96I45 108 aa2□□□□□ -2.09
NUP88-209ENST00000574855 LINC00474Q9P2X8 69 aa2□□□□□ -2.09
NUP88-209ENST00000574855 IGLV4-69A0A075B6H9 119 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 IGHV3-64A0A075B6Q5 118 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 IGHV3OR16-8A0A075B7F1 116 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 A0A087WSZ3 146 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 E7EUB6 86 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 H3BRM9 83 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 BAALC-AS2P0C853 105 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 P0C880 135 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 PRB4P10163 310 aaPredicted RBP1.99□□□□□ -2.09
NUP88-209ENST00000574855 MIFP14174 115 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 WT1-ASQ06250 92 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 FXYD3Q14802 87 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 KPRPQ5T749 579 aaPredicted RBP1.99□□□□□ -2.09
NUP88-209ENST00000574855 MINOS1Q5TGZ0 78 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 HCP5Q6MZN7 132 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 PP632Q6XCG6 107 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 CASC2Q6XLA1 102 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 BAGE3Q86Y29 109 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 LYPD1Q8N2G4 141 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 CMTM2Q8TAZ6 248 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 LCE3DQ9BYE3 92 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 TMEM14CQ9P0S9 112 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 S4R3C0 116 aa1.99□□□□□ -2.09
NUP88-209ENST00000574855 PRR14LQ5THK1 2151 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 IGLV10-54A0A075B6I4 117 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 IGLV2-18A0A075B6J9 118 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 A0A0J9YX75 114 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 SMIM27A0A1W2PRY6 76 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 IGLC2P0DOY2 106 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 IGLC3P0DOY3 106 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 EFNA4P52798 201 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 DEFB113Q30KQ7 82 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 TMEM136Q6ZRR5 245 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 MYOZ3Q8TDC0 251 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 PPDPFLQ8WWR9 84 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 FAM167A-AS1Q96KT0 104 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 HEATR1Q9H583 2144 aaKnown RBP1.98□□□□□ -2.09
NUP88-209ENST00000574855 ST20Q9HBF5 79 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 MRPL35Q9NZE8 188 aaKnown RBP1.98□□□□□ -2.09
NUP88-209ENST00000574855 RABAC1Q9UI14 185 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 KLK12Q9UKR0 248 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 HILPDAQ9Y5L2 63 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 SPCS1Q9Y6A9 102 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 V9GYV3 84 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 LAMA2P24043 3122 aaKnown RBP1.98□□□□□ -2.09
NUP88-209ENST00000574855 GPR179Q6PRD1 2367 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 CACNA1DQ01668 2161 aa1.98□□□□□ -2.09
NUP88-209ENST00000574855 ESPL1Q14674 2120 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 TRAV2A0A0B4J234 112 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 TRBV6-1A0A0K0K1D8 114 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 LYNX1G3V0Z9 82 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 I3L2K1 104 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 NDUFA3O95167 84 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 LYNX1P0DP58 116 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 KRTDAPP60985 99 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 SEC11AP67812 179 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 MIR22HGQ0VDD5 57 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 PDE6HQ13956 83 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 PMCHL1Q16048 86 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 C10orf55Q5SWW7 151 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 OR10AG1Q8NH19 301 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 Q8TAT8 98 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 CYSTM1Q9H1C7 97 aa1.97□□□□□ -2.09
NUP88-209ENST00000574855 CDH23Q9H251 3354 aa1.96□□□□□ -2.09
NUP88-209ENST00000574855 INTS1Q8N201 2190 aaKnown RBP1.96□□□□□ -2.1
NUP88-209ENST00000574855 TRBV7-1A0A0A6YYK4 115 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 A0A1W2PPM0 123 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 ODF3BA8MYP8 253 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 H3BRN7 92 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 K7EIM0 57 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 SPINK4O60575 86 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 ERC2-IT1O76042 136 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 WFDC2Q14508 124 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 ETDBQ3ZM63 59 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 C9orf116Q5BN46 136 aaPredicted RBP1.96□□□□□ -2.1
NUP88-209ENST00000574855 BVES-AS1Q5T3Y7 98 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 VMO1Q7Z5L0 202 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms