RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CACNG7P62955 275 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 WFDC2Q14508 124 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 PAPPA-AS1Q5QFB9 102 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 NFE4Q86UQ8 179 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 PGLYRP4Q96LB8 373 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 TPPP3Q9BW30 176 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 C11orf21Q9P2W6 132 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 SS18L2Q9UHA2 77 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 LRP1Q07954 4544 aaKnown RBP4.49□□□□□ -1.69
VPS53-213ENST00000572334 TRAV8-1A0A0A6YYK1 113 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 ORM1P02763 201 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 CRYGDP07320 174 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 PRSS1P07477 247 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 GATA1P15976 413 aaPredicted RBP4.49□□□□□ -1.69
VPS53-213ENST00000572334 ZNF80P51504 273 aaPredicted RBP4.49□□□□□ -1.69
VPS53-213ENST00000572334 NDUFV3P56181 108 aaKnown RBP4.49□□□□□ -1.69
VPS53-213ENST00000572334 TIRAPP58753 221 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 CFAP126Q5VTH2 177 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 PTH2Q96A98 100 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 URB1-AS1Q96HZ7 61 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 PRELID3AQ96N28 172 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 MLST8Q9BVC4 326 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 IMUPQ9GZP8 106 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 OTORQ9NRC9 128 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 FAM30AQ9NZY2 134 aa4.49□□□□□ -1.69
VPS53-213ENST00000572334 PKHD1L1Q86WI1 4243 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 TRGV11A0A075B6L2 103 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 TRBV25-1A0A075B6N4 114 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 PGPA6NDG6 321 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 IBA57-AS1B1ANH7 110 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 M0R2P5 195 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 ACYP1P07311 99 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 FCER1GP30273 86 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 RPL13AP40429 203 aaKnown RBP4.48□□□□□ -1.69
VPS53-213ENST00000572334 HERVK_113P61574 105 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 GNG5P63218 68 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 PMVKQ15126 192 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 LINC01556Q5JQF7 62 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 FAM159AQ6UWV7 190 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 GOLT1AQ6ZVE7 132 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 SMIM20Q8N5G0 67 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 TMEM75Q8N9X5 138 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 DNAJC30Q96LL9 226 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 LINC00479Q96M42 142 aa4.48□□□□□ -1.69
VPS53-213ENST00000572334 TRAV21A0A0B4J279 112 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 IGHV3-38A0A0C4DH36 116 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 MYMXA0A1B0GTQ4 84 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 A0A1B0GX51 115 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 LINC01546A6NGU7 62 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 RS1O15537 224 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 NPYP01303 97 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 IGLV2-11P01706 119 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 LINC00694P0DN24 101 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 RNASE3P12724 160 aaKnown RBP4.47□□□□□ -1.69
VPS53-213ENST00000572334 CKS2P33552 79 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 Q6ZSN1 163 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 Q8N3U1 123 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 SLC25A29Q8N8R3 303 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 SGK494Q96LW2 274 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 C9orf85Q96MD7 179 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 Q9UF83 564 aa4.47□□□□□ -1.69
VPS53-213ENST00000572334 FAT3Q8TDW7 4589 aa4.46□□□□□ -1.69
VPS53-213ENST00000572334 TRAV12-1A0A0B4J245 112 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 FAM240AA0A1B0GVK7 77 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 J3KT08 172 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 SNAI2O43623 268 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 PPP1R17O96001 155 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 TCRAP04437 139 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 FXYD2P54710 66 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 RPS28P62857 69 aaKnown RBP4.46□□□□□ -1.7
VPS53-213ENST00000572334 FAM104BQ5XKR9 115 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 Q6ZSA8 131 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 SH2D6Q7Z4S9 175 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 C10orf126Q8N4M7 172 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 Q8N814 137 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 TMEM101Q96IK0 257 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 CDIP1Q9H305 208 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 PRO0461Q9UI25 63 aa4.46□□□□□ -1.7
VPS53-213ENST00000572334 IGLV5-52A0A0A0MRZ9 124 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 IGHV3-73A0A0B4J1V6 119 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 TRAV8-4A0A0B4J246 113 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 LOC107984156A0A0G2JMH3 177 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 TRBV6-4A0A1B0GX49 114 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 H7C1H1 209 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 MT-ATP8P03928 68 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 IFI27P40305 119 aaPredicted RBP4.45□□□□□ -1.7
VPS53-213ENST00000572334 PSMB2P49721 201 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 ZNF876PQ49A33 203 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 MEIG1Q5JSS6 88 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 LELP1Q5T871 98 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 LINC00173Q6ZV60 143 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 Q86TA4 180 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 ARL17AQ8IVW1 177 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 NTN5Q8WTR8 489 aaPredicted RBP4.45□□□□□ -1.7
VPS53-213ENST00000572334 LINC01600Q96MT4 127 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 C20orf78Q9BR46 151 aa4.45□□□□□ -1.7
VPS53-213ENST00000572334 A0A087WX48 190 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.44□□□□□ -1.7
VPS53-213ENST00000572334 IGKV3D-20A0A0C4DH25 116 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 IGHV3-30P01768 117 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms