RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 POLQO75417 2590 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 DNAL4O96015 105 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 COX7B2Q8TF08 81 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 NOP10Q9NPE3 64 aaKnown RBP7.68□□□□□ -1.18
CCDC40-207ENST00000572253 RNASE1P07998 156 aaKnown RBP7.67□□□□□ -1.18
CCDC40-207ENST00000572253 GAGE2AQ6NT46 116 aa7.67□□□□□ -1.18
CCDC40-207ENST00000572253 ANKRD17O75179 2603 aaKnown RBP7.67□□□□□ -1.18
CCDC40-207ENST00000572253 EPG5Q9HCE0 2579 aa7.67□□□□□ -1.18
CCDC40-207ENST00000572253 A0A1W2PRX2 142 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 LINC00158P58513 81 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 IGKV3OR2-268A0A0C4DH90 116 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 SND1-IT1Q9HBX3 110 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 FASNP49327 2511 aaKnown RBP7.66□□□□□ -1.18
CCDC40-207ENST00000572253 FAM236AA0A1B0GUQ0 79 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 FAM236BA0A1B0GV22 79 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 TMEM86BQ8N661 226 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 MIR7-3HGQ8N6C7 128 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 C16orf74Q96GX8 76 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 CHCHD5Q9BSY4 110 aa7.66□□□□□ -1.18
CCDC40-207ENST00000572253 TRGV4A0A0C4DH28 118 aa7.65□□□□□ -1.18
CCDC40-207ENST00000572253 RPL28P46779 137 aaKnown RBP7.65□□□□□ -1.18
CCDC40-207ENST00000572253 CCL24O00175 119 aa7.65□□□□□ -1.18
CCDC40-207ENST00000572253 MTORP42345 2549 aa7.65□□□□□ -1.18
CCDC40-207ENST00000572253 C11orf44Q8N8P7 122 aa7.64□□□□□ -1.19
CCDC40-207ENST00000572253 COL12A1Q99715 3063 aa7.64□□□□□ -1.19
CCDC40-207ENST00000572253 MALP21145 153 aa7.64□□□□□ -1.19
CCDC40-207ENST00000572253 TRBV6-4A0A1B0GX49 114 aa7.63□□□□□ -1.19
CCDC40-207ENST00000572253 H0YGX0 51 aa7.63□□□□□ -1.19
CCDC40-207ENST00000572253 DEFB113Q30KQ7 82 aa7.63□□□□□ -1.19
CCDC40-207ENST00000572253 Q96MF0 132 aa7.63□□□□□ -1.19
CCDC40-207ENST00000572253 Q9HAA7 133 aa7.63□□□□□ -1.19
CCDC40-207ENST00000572253 ATP5G1P05496 136 aa7.62□□□□□ -1.19
CCDC40-207ENST00000572253 FAM218AQ96MZ4 157 aa7.62□□□□□ -1.19
CCDC40-207ENST00000572253 TMEM126AQ9H061 195 aa7.62□□□□□ -1.19
CCDC40-207ENST00000572253 ITPR1Q14643 2758 aa7.62□□□□□ -1.19
CCDC40-207ENST00000572253 HIST1H4AP62805 103 aaKnown RBP7.61□□□□□ -1.19
CCDC40-207ENST00000572253 LRRC75A-AS1Q8N1F1 130 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 ZFHX3Q15911 3703 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 IBA57-AS1B1ANH7 110 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 RPL35AP18077 110 aaKnown RBP7.61□□□□□ -1.19
CCDC40-207ENST00000572253 CXCL5P42830 114 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 FN1P02751 2386 aaKnown RBP7.61□□□□□ -1.19
CCDC40-207ENST00000572253 LINC00337Q8N6G1 96 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 LOC100131303A0A0U1RQF7 123 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 PAX4O43316 350 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 MRAPQ8TCY5 172 aa7.61□□□□□ -1.19
CCDC40-207ENST00000572253 SMCR5Q8TEV8 140 aa7.6□□□□□ -1.19
CCDC40-207ENST00000572253 SMIM11BQ8TCY0 68 aa7.6□□□□□ -1.19
CCDC40-207ENST00000572253 TRBV6-8A0A0A6YYG3 113 aa7.6□□□□□ -1.19
CCDC40-207ENST00000572253 PFN2P35080 140 aa7.6□□□□□ -1.19
CCDC40-207ENST00000572253 CCL18P55774 89 aa7.59□□□□□ -1.19
CCDC40-207ENST00000572253 C5orf47Q569G3 176 aa7.59□□□□□ -1.19
CCDC40-207ENST00000572253 SDIM1Q6ZPB5 146 aa7.59□□□□□ -1.19
CCDC40-207ENST00000572253 DNAJC9-AS1A6NH13 148 aa7.59□□□□□ -1.19
CCDC40-207ENST00000572253 C6orf226Q5I0X4 101 aa7.59□□□□□ -1.2
CCDC40-207ENST00000572253 IGKV2-28A0A075B6P5 120 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 IGKV2D-28P01615 120 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 C5orf38Q86SI9 138 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 FLNCQ14315 2725 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 CENPEQ02224 2701 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 A0A087WZ39 114 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 J3KT08 172 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 CR1P17927 2039 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 IGHV3OR16-9A0A0B4J2B5 98 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 C3orf22Q8N5N4 141 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 PKIGQ9Y2B9 76 aa7.58□□□□□ -1.2
CCDC40-207ENST00000572253 IGLV4-60A0A075B6I1 120 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 UQCRQO14949 82 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 KRTAP10-9P60411 292 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 C11orf68Q9H3H3 251 aaKnown RBP7.57□□□□□ -1.2
CCDC40-207ENST00000572253 A0A087WYN8 130 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 LECT2O14960 151 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 FAM110AQ9BQ89 295 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 CFAP46Q8IYW2 2715 aa7.57□□□□□ -1.2
CCDC40-207ENST00000572253 SS18Q15532 418 aa7.56□□□□□ -1.2
CCDC40-207ENST00000572253 ZNF462Q96JM2 2506 aa7.56□□□□□ -1.2
CCDC40-207ENST00000572253 PLAC8L1A1L4L8 177 aa7.56□□□□□ -1.2
CCDC40-207ENST00000572253 C22orf24Q9Y442 160 aa7.56□□□□□ -1.2
CCDC40-207ENST00000572253 GIG44P09565 113 aaPredicted RBP7.56□□□□□ -1.2
CCDC40-207ENST00000572253 C14orf132Q9NPU4 83 aa7.56□□□□□ -1.2
CCDC40-207ENST00000572253 FHL2Q14192 279 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 ZANQ9Y493 2812 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 ATOX1O00244 68 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 WFDC10AQ9H1F0 79 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 LINC00959A0A1B0GUT2 108 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 ORMDL1Q9P0S3 153 aa7.55□□□□□ -1.2
CCDC40-207ENST00000572253 S100A7L2Q5SY68 101 aa7.54□□□□□ -1.2
CCDC40-207ENST00000572253 CELSR2Q9HCU4 2923 aa7.54□□□□□ -1.2
CCDC40-207ENST00000572253 VPS13CQ709C8 3753 aa7.54□□□□□ -1.2
CCDC40-207ENST00000572253 ACANP16112 2415 aa7.54□□□□□ -1.2
CCDC40-207ENST00000572253 DEFB130BP0DP73 79 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 DEFB130AP0DP74 79 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 LINC00526Q96FQ7 95 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 CRYBG3Q68DQ2 2970 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 IGLV1-51P01701 117 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 PRB1P04280 392 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 XCL1P47992 114 aa7.53□□□□□ -1.2
CCDC40-207ENST00000572253 KLK5Q9Y337 293 aaPredicted RBP7.53□□□□□ -1.2
CCDC40-207ENST00000572253 Q6JHZ5 121 aa7.52□□□□□ -1.2
CCDC40-207ENST00000572253 COX7CP15954 63 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms