RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 KIAA0087Q14695 138 aa11.37□□□□□ -0.59
NUP88-203ENST00000572019 MRPL51Q4U2R6 128 aaKnown RBP11.37□□□□□ -0.59
NUP88-203ENST00000572019 C9orf129Q5T035 196 aaKnown RBP11.37□□□□□ -0.59
NUP88-203ENST00000572019 SLC51BQ86UW2 128 aa11.37□□□□□ -0.59
NUP88-203ENST00000572019 KIR2DL4Q99706 377 aa11.37□□□□□ -0.59
NUP88-203ENST00000572019 UBE2BP63146 152 aa11.36□□□□□ -0.59
NUP88-203ENST00000572019 KRTAP9-6A0A140TA67 174 aa11.35□□□□□ -0.59
NUP88-203ENST00000572019 C2orf82Q6UX34 121 aa11.35□□□□□ -0.59
NUP88-203ENST00000572019 V9GYV3 84 aa11.35□□□□□ -0.59
NUP88-203ENST00000572019 OSTCQ9NRP0 149 aa11.34□□□□□ -0.59
NUP88-203ENST00000572019 A0A0U1RQV1 116 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 F8WDY8 70 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 RPL13AP40429 203 aaKnown RBP11.33□□□□□ -0.6
NUP88-203ENST00000572019 SMAGPQ0VAQ4 97 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 RIGQ13278 110 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 TMEM241Q24JQ0 296 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 SMIM7Q9BQ49 75 aa11.33□□□□□ -0.6
NUP88-203ENST00000572019 A0A087X002 238 aa11.32□□□□□ -0.6
NUP88-203ENST00000572019 FAM104BQ5XKR9 115 aa11.32□□□□□ -0.6
NUP88-203ENST00000572019 IFITM10A6NMD0 228 aa11.31□□□□□ -0.6
NUP88-203ENST00000572019 PPP1R17O96001 155 aa11.31□□□□□ -0.6
NUP88-203ENST00000572019 ALKAL2Q6UX46 152 aa11.31□□□□□ -0.6
NUP88-203ENST00000572019 TMEM18Q96B42 140 aa11.31□□□□□ -0.6
NUP88-203ENST00000572019 PPP1R2P9O14990 202 aa11.3□□□□□ -0.6
NUP88-203ENST00000572019 TCAPO15273 167 aa11.3□□□□□ -0.6
NUP88-203ENST00000572019 MRPS36P82909 103 aaKnown RBP11.3□□□□□ -0.6
NUP88-203ENST00000572019 SPANXA1Q9NS26 97 aa11.3□□□□□ -0.6
NUP88-203ENST00000572019 CARHSP1Q9Y2V2 147 aaKnown RBP11.3□□□□□ -0.6
NUP88-203ENST00000572019 TRBV24-1A0A075B6N3 115 aa11.29□□□□□ -0.6
NUP88-203ENST00000572019 ZNF861PO60384 105 aa11.29□□□□□ -0.6
NUP88-203ENST00000572019 HBBP68871 147 aa11.29□□□□□ -0.6
NUP88-203ENST00000572019 TCTE3Q8IZS6 198 aa11.29□□□□□ -0.6
NUP88-203ENST00000572019 C20orf78Q9BR46 151 aa11.29□□□□□ -0.6
NUP88-203ENST00000572019 ZNF727A8MUV8 499 aa11.28□□□□□ -0.6
NUP88-203ENST00000572019 TNFRSF6BO95407 300 aa11.28□□□□□ -0.6
NUP88-203ENST00000572019 RPL32P62910 135 aaKnown RBP11.28□□□□□ -0.6
NUP88-203ENST00000572019 LINC00242Q5T6M2 205 aa11.28□□□□□ -0.6
NUP88-203ENST00000572019 SMIM2Q9BVW6 85 aa11.28□□□□□ -0.6
NUP88-203ENST00000572019 NDUFC2-KCTD14E9PQ53 114 aa11.27□□□□□ -0.61
NUP88-203ENST00000572019 NPYP01303 97 aa11.27□□□□□ -0.61
NUP88-203ENST00000572019 SRP19P09132 144 aaKnown RBP11.26□□□□□ -0.61
NUP88-203ENST00000572019 LINC00469Q8N7U9 141 aa11.26□□□□□ -0.61
NUP88-203ENST00000572019 TGIF2-C20orf24A0A0A6YYL0 155 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 TRBV30A0A0K0K1B3 111 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 CKS2P33552 79 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 BLOC1S1P78537 153 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 ZC2HC1BQ5TFG8 222 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 NAT8BQ9UHF3 227 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 MUC17Q685J3 4493 aa11.25□□□□□ -0.61
NUP88-203ENST00000572019 D6R8Y8 96 aa11.24□□□□□ -0.61
NUP88-203ENST00000572019 FAM74A3Q4VXF1 159 aa11.24□□□□□ -0.61
NUP88-203ENST00000572019 RETNLBQ9BQ08 111 aa11.24□□□□□ -0.61
NUP88-203ENST00000572019 CTDSP1Q9GZU7 261 aa11.24□□□□□ -0.61
NUP88-203ENST00000572019 EIF5A2Q9GZV4 153 aaKnown RBP11.24□□□□□ -0.61
NUP88-203ENST00000572019 C22orf24Q9Y442 160 aa11.24□□□□□ -0.61
NUP88-203ENST00000572019 IGLV4-3A0A075B6K6 122 aa11.23□□□□□ -0.61
NUP88-203ENST00000572019 LINC00862A6NCI5 91 aa11.23□□□□□ -0.61
NUP88-203ENST00000572019 ANAPC11Q9NYG5 84 aa11.23□□□□□ -0.61
NUP88-203ENST00000572019 SMIM27A0A1W2PRY6 76 aa11.22□□□□□ -0.61
NUP88-203ENST00000572019 RPL23P62829 140 aaKnown RBP11.22□□□□□ -0.61
NUP88-203ENST00000572019 XAGE1AQ9HD64 81 aa11.22□□□□□ -0.61
NUP88-203ENST00000572019 PACRGQ96M98 296 aaPredicted RBP11.21□□□□□ -0.61
NUP88-203ENST00000572019 C9JQL5 133 aa11.19□□□□□ -0.62
NUP88-203ENST00000572019 KRTAP13-2Q52LG2 175 aa11.19□□□□□ -0.62
NUP88-203ENST00000572019 MRPL54Q6P161 138 aaKnown RBP11.19□□□□□ -0.62
NUP88-203ENST00000572019 TYMSOSQ8TAI1 123 aa11.19□□□□□ -0.62
NUP88-203ENST00000572019 NUPR1O60356 82 aa11.18□□□□□ -0.62
NUP88-203ENST00000572019 LINC00173Q6ZV60 143 aa11.18□□□□□ -0.62
NUP88-203ENST00000572019 A0A1B0GXF2 115 aa11.17□□□□□ -0.62
NUP88-203ENST00000572019 IFI27P40305 119 aaPredicted RBP11.17□□□□□ -0.62
NUP88-203ENST00000572019 ADIRFQ15847 76 aa11.17□□□□□ -0.62
NUP88-203ENST00000572019 PYGO1Q9Y3Y4 419 aa11.17□□□□□ -0.62
NUP88-203ENST00000572019 TMEM141Q96I45 108 aa11.16□□□□□ -0.62
NUP88-203ENST00000572019 TOMM7Q9P0U1 55 aa11.16□□□□□ -0.62
NUP88-203ENST00000572019 CRYGAP11844 174 aa11.15□□□□□ -0.62
NUP88-203ENST00000572019 BCE1O60756 84 aa11.14□□□□□ -0.63
NUP88-203ENST00000572019 RPL37AP8A6NKH3 93 aa11.13□□□□□ -0.63
NUP88-203ENST00000572019 MRPL55Q7Z7F7 128 aaKnown RBP11.13□□□□□ -0.63
NUP88-203ENST00000572019 LINC01561Q8N1V8 128 aa11.13□□□□□ -0.63
NUP88-203ENST00000572019 A0A1B0GW15 77 aa11.12□□□□□ -0.63
NUP88-203ENST00000572019 RPL28P46779 137 aaKnown RBP11.12□□□□□ -0.63
NUP88-203ENST00000572019 SRSF3P84103 164 aaKnown RBP11.12□□□□□ -0.63
NUP88-203ENST00000572019 TEX43Q6ZNM6 134 aa11.12□□□□□ -0.63
NUP88-203ENST00000572019 RAB5AP20339 215 aa11.11□□□□□ -0.63
NUP88-203ENST00000572019 CKS1BP61024 79 aa11.11□□□□□ -0.63
NUP88-203ENST00000572019 LBHQ53QV2 105 aaPredicted RBP11.11□□□□□ -0.63
NUP88-203ENST00000572019 LINC00167Q96N53 147 aa11.11□□□□□ -0.63
NUP88-203ENST00000572019 AMELXQ99217 191 aa11.11□□□□□ -0.63
NUP88-203ENST00000572019 LOC389332A0A1B0GUA5 103 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 PRSS2P07478 247 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 KRTAP13-1Q8IUC0 172 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 Q8IZM0 81 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 ORMDL3Q8N138 153 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 PRELID3AQ96N28 172 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 TP73-AS1Q9UF72 201 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 NAT8Q9UHE5 227 aa11.1□□□□□ -0.63
NUP88-203ENST00000572019 GAGE10A6NGK3 116 aa11.09□□□□□ -0.63
NUP88-203ENST00000572019 F8W036 122 aa11.09□□□□□ -0.63
NUP88-203ENST00000572019 PPBPP02775 128 aa11.09□□□□□ -0.63
NUP88-203ENST00000572019 C6orf226Q5I0X4 101 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms