RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 RAB5AP20339 215 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 IFI27P40305 119 aaPredicted RBP6.12□□□□□ -1.43
CIITA-207ENST00000571545 MRPS36P82909 103 aaKnown RBP6.12□□□□□ -1.43
CIITA-207ENST00000571545 RNF151Q2KHN1 245 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 MRPL54Q6P161 138 aaKnown RBP6.12□□□□□ -1.43
CIITA-207ENST00000571545 REG3GQ6UW15 175 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 SPINK6Q6UWN8 80 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 Q6ZRP5 223 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 LAMTOR2Q9Y2Q5 125 aa6.12□□□□□ -1.43
CIITA-207ENST00000571545 C9JQL5 133 aa6.11□□□□□ -1.43
CIITA-207ENST00000571545 SPAG11BQ08648 103 aa6.11□□□□□ -1.43
CIITA-207ENST00000571545 TGIF2-C20orf24A0A0A6YYL0 155 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 A0A1B0GVG6 124 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 IFITM10A6NMD0 228 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 RAB14P61106 215 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 SRSF3P84103 164 aaKnown RBP6.1□□□□□ -1.43
CIITA-207ENST00000571545 RNASE13Q5GAN3 156 aaKnown RBP6.1□□□□□ -1.43
CIITA-207ENST00000571545 ANAPC16Q96DE5 110 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 LINC00526Q96FQ7 95 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 IMMP2LQ96T52 175 aa6.1□□□□□ -1.43
CIITA-207ENST00000571545 MRPL35Q9NZE8 188 aaKnown RBP6.1□□□□□ -1.43
CIITA-207ENST00000571545 K7EMI3 77 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 NDUFA1O15239 70 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 NPYP01303 97 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 MT-ND4LP03901 98 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 MT1HL1P0DM35 61 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 RPL39P62891 51 aaKnown RBP6.09□□□□□ -1.43
CIITA-207ENST00000571545 RPL18AQ02543 176 aaKnown RBP6.09□□□□□ -1.43
CIITA-207ENST00000571545 GAGE2BQ13066 116 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 TMEM136Q6ZRR5 245 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 C5orf38Q86SI9 138 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 LINC01600Q96MT4 127 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 PRELID3AQ96N28 172 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 PYGO1Q9Y3Y4 419 aa6.09□□□□□ -1.43
CIITA-207ENST00000571545 IGHV3OR16-9A0A0B4J2B5 98 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 TMEM238LA0A1B0GVL6 79 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 Q6ZN92 141 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 ORAOV1Q8WV07 137 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 C2orf88Q9BSF0 95 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 KRTAP9-2Q9BYQ4 174 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 MAP1LC3AQ9H492 121 aa6.08□□□□□ -1.44
CIITA-207ENST00000571545 PRSS47A8MTI9 375 aa6.07□□□□□ -1.44
CIITA-207ENST00000571545 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.07□□□□□ -1.44
CIITA-207ENST00000571545 NPSP0C0P6 89 aa6.07□□□□□ -1.44
CIITA-207ENST00000571545 G0S2P27469 103 aa6.07□□□□□ -1.44
CIITA-207ENST00000571545 TEX43Q6ZNM6 134 aa6.07□□□□□ -1.44
CIITA-207ENST00000571545 TMEM141Q96I45 108 aa6.07□□□□□ -1.44
CIITA-207ENST00000571545 A0A0J9YXV3 536 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
CIITA-207ENST00000571545 MT-ND6P03923 174 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 ORMDL2Q53FV1 153 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 C9orf116Q5BN46 136 aaPredicted RBP6.06□□□□□ -1.44
CIITA-207ENST00000571545 PAPPA-AS1Q5QFB9 102 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 LINC01561Q8N1V8 128 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 CYSLTR1Q9Y271 337 aa6.06□□□□□ -1.44
CIITA-207ENST00000571545 A0A087WZ39 114 aa6.05□□□□□ -1.44
CIITA-207ENST00000571545 TRBV30A0A0K0K1B3 111 aa6.05□□□□□ -1.44
CIITA-207ENST00000571545 TLX1NBP0CAT3 122 aa6.05□□□□□ -1.44
CIITA-207ENST00000571545 SEC11AP67812 179 aa6.05□□□□□ -1.44
CIITA-207ENST00000571545 LRP1Q07954 4544 aaKnown RBP6.04□□□□□ -1.44
CIITA-207ENST00000571545 IGLV4-3A0A075B6K6 122 aa6.04□□□□□ -1.44
CIITA-207ENST00000571545 KRTAP9-6A0A140TA67 174 aa6.04□□□□□ -1.44
CIITA-207ENST00000571545 Q8N8P6 123 aa6.04□□□□□ -1.44
CIITA-207ENST00000571545 PACRGQ96M98 296 aaPredicted RBP6.04□□□□□ -1.44
CIITA-207ENST00000571545 NXT2Q9NPJ8 142 aaKnown RBP6.04□□□□□ -1.44
CIITA-207ENST00000571545 LINC01549A6NIU2 74 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 PRSS2P07478 247 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 SRSF9Q13242 221 aaKnown RBP eCLIP6.03□□□□□ -1.44
CIITA-207ENST00000571545 LINC00242Q5T6M2 205 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 C2orf66Q6UXQ4 117 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 FAM104AQ969W3 186 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 OPRPNQ99935 248 aaPredicted RBP6.03□□□□□ -1.44
CIITA-207ENST00000571545 CTDSP1Q9GZU7 261 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 VCX2Q9H322 139 aa6.03□□□□□ -1.44
CIITA-207ENST00000571545 LOC389332A0A1B0GUA5 103 aa6.02□□□□□ -1.45
CIITA-207ENST00000571545 A0A1W2PNN7 141 aa6.02□□□□□ -1.45
CIITA-207ENST00000571545 PSORS1C2Q9UIG4 136 aa6.02□□□□□ -1.45
CIITA-207ENST00000571545 TRAV9-1A0A075B6T8 112 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 NDUFC2-KCTD14E9PQ53 114 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 UBE2D1P51668 147 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 CKS1BP61024 79 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 HERVK_113P63121 156 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 C1orf137Q5JT78 98 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 UQCC3Q6UW78 93 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 UNQ6190/PRO20217Q6UXQ8 127 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 DIRC1Q969H9 104 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 C6orf48Q9UBA6 75 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 PKHD1L1Q86WI1 4243 aa6.01□□□□□ -1.45
CIITA-207ENST00000571545 CXCL5P42830 114 aa6□□□□□ -1.45
CIITA-207ENST00000571545 CLLU1Q5K131 121 aa6□□□□□ -1.45
CIITA-207ENST00000571545 PHF5AQ7RTV0 110 aaKnown RBP6□□□□□ -1.45
CIITA-207ENST00000571545 AMELXQ99217 191 aa6□□□□□ -1.45
CIITA-207ENST00000571545 TIMM17AQ99595 171 aa6□□□□□ -1.45
CIITA-207ENST00000571545 FAT3Q8TDW7 4589 aa6□□□□□ -1.45
CIITA-207ENST00000571545 S100PP25815 95 aa5.99□□□□□ -1.45
CIITA-207ENST00000571545 UBE2BP63146 152 aa5.99□□□□□ -1.45
CIITA-207ENST00000571545 KIAA0087Q14695 138 aa5.99□□□□□ -1.45
CIITA-207ENST00000571545 COX19Q49B96 90 aa5.99□□□□□ -1.45
CIITA-207ENST00000571545 GAGE2EQ4V326 116 aa5.99□□□□□ -1.45
CIITA-207ENST00000571545 C10orf25Q5T742 122 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms