RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ATP1A1-AS1Q5TC04 95 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 FAM74A4Q5TZK3 123 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 Q8TAT8 98 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 PLAC8Q9NZF1 115 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 KLK9Q9UKQ9 250 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 S4R3C0 116 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 DSCAML1Q8TD84 2053 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 COL27A1Q8IZC6 1860 aaPredicted RBP2.16□□□□□ -2.06
VPS35-208ENST00000568612 IGLV4-3A0A075B6K6 122 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-43A0A0B4J1X8 118 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-16A0A0C4DH30 117 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 TFF1P04155 84 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-43DP0DP04 118 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 DSCR10P59022 87 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 RPL39P62891 51 aaKnown RBP2.15□□□□□ -2.07
VPS35-208ENST00000568612 WT1-ASQ06250 92 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 RNASE13Q5GAN3 156 aaKnown RBP2.15□□□□□ -2.07
VPS35-208ENST00000568612 LINC00242Q5T6M2 205 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 SPANXA2-OT1Q8N9U9 137 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 C20orf203Q8NBC4 194 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 TMEM167AQ8TBQ9 72 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 DEFB126Q9BYW3 111 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 CELA1Q9UNI1 258 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 MED13Q9UHV7 2174 aa2.15□□□□□ -2.07
VPS35-208ENST00000568612 IGKV3D-11A0A0A0MRZ8 115 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 K7EQD1 137 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 RTL8CO15255 209 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 LY6G6DO95868 133 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 IGKV4-1P06312 121 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 MGPP08493 103 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 HAMPP81172 84 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 REG3AQ06141 175 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 LCE3CQ5T5A8 94 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 KRTAP5-4Q6L8H1 288 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 SMIM11BQ8TCY0 68 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 LINC00208Q96KT6 92 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 XAGE1AQ9HD64 81 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 MALRD1Q5VYJ5 2156 aa2.14□□□□□ -2.07
VPS35-208ENST00000568612 CACNA1DQ01668 2161 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 MUC4Q99102 2169 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 NAV3Q8IVL0 2385 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.13□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-38A0A0C4DH36 116 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 DEFB108AA8MXU0 73 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 H3BQ85 93 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 PLXNB1O43157 2135 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 CDK2AP2O75956 126 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 CCL5P13501 91 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 B9D2Q9BPU9 175 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 LINC00467Q9BRT7 94 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 SND1-IT1Q9HBX3 110 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 LINC01558Q9Y6Z2 57 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 PRR14LQ5THK1 2151 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 CADP27708 2225 aa2.13□□□□□ -2.07
VPS35-208ENST00000568612 ZGRF1Q86YA3 2104 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGKV2-28A0A075B6P5 120 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3OR16-13A0A075B7E8 117 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-49A0A0A0MS15 119 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-73A0A0B4J1V6 119 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGKV1-17P01599 117 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGKV2D-28P01615 120 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGKV3-15P01624 115 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-53P01767 116 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 CCL3P10147 92 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 LINC00315P59091 139 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 ROMO1P60602 79 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 C1orf134Q5TEV5 83 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 Q6ZTI0 123 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 ADM2Q7Z4H4 148 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 COX7B2Q8TF08 81 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 LENEPQ9Y5L5 61 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 PDE4DIPQ5VU43 2346 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 DOCK10Q96BY6 2186 aa2.12□□□□□ -2.07
VPS35-208ENST00000568612 RP1P56715 2156 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 IGLV4-60A0A075B6I1 120 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-72A0A0B4J1Y9 119 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 IGHV1-3A0A0C4DH29 117 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 A0A1B0GVY2 172 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 A0A1W2PNM2 257 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 CLPSL1A2RUU4 121 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 NDUFA4O00483 81 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-48P01763 117 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 C10orf55Q5SWW7 151 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 SPINK14Q6IE38 97 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 NTM-AS1Q6ZSK4 140 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 Q8NAQ8 132 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 Q8NBF4 154 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 LEAP2Q969E1 77 aa2.11□□□□□ -2.07
VPS35-208ENST00000568612 DNAJC13O75165 2243 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 TNCP24821 2201 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3OR16-8A0A075B7F1 116 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 ETDCA0A1B0GVM5 59 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 I3L2K1 104 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 IGLV2-23P01705 113 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 CGB3P0DN86 165 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 CGB7P0DN87 165 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 IGHV1-8P0DP01 117 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 CNBPP62633 177 aaKnown RBP2.1□□□□□ -2.07
VPS35-208ENST00000568612 DEFB110Q30KQ9 67 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms