RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TMEM131LA2VDJ0 1609 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ADAMTS12P58397 1594 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 CFAP74Q9C0B2 1584 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 HMGXB3Q12766 1538 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 CCDC141Q6ZP82 1450 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 LOC285095A0A1B0GVY8 99 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 IGLC7A0M8Q6 106 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 FXYD1O00168 92 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 EFNA4P52798 201 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 CCL18P55774 89 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 KLKP1Q107X0 134 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ETDBQ3ZM63 59 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 FAM74A4Q5TZK3 123 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 SFTA2Q6UW10 78 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ALKAL2Q6UX46 152 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ZNF720Q7Z2F6 126 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 PPP1R1CQ8WVI7 109 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 LINC00208Q96KT6 92 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 HIGD1BQ9P298 99 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 RABAC1Q9UI14 185 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 V9GYH0 126 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 RGPD2P0DJD1 1756 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ARFGEF2Q9Y6D5 1785 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 PTPRZ1P23471 2315 aaPredicted RBP0.49□□□□□ -2.33
VPS35-207ENST00000568191 MYO5CQ9NQX4 1742 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 IQGAP3Q86VI3 1631 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 PTPN23Q9H3S7 1636 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ABCA8O94911 1581 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.48□□□□□ -2.33
VPS35-207ENST00000568191 ABCC2Q92887 1545 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 IQSEC2Q5JU85 1478 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SPTA1P02549 2419 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 CLIP1P30622 1438 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SCN11AQ9UI33 1791 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 CRYBG1Q9Y4K1 1723 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 POLQO75417 2590 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 TRBV25-1A0A075B6N4 114 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.48□□□□□ -2.33
VPS35-207ENST00000568191 A0A1W2PPM0 123 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 TMEM14DPA8MWL7 114 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SAA2P0DJI9 122 aaPredicted RBP0.48□□□□□ -2.33
VPS35-207ENST00000568191 CAV3P56539 151 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SPAG11BQ08648 103 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 PMCHL1Q16048 86 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 PSMG4Q5JS54 123 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 TMEM170BQ5T4T1 132 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SPAG11AQ6PDA7 123 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 Q6ZQY7 126 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 Q86TA4 180 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 FAM223AQ8IWN6 122 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 AMELXQ99217 191 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 CCL19Q99731 98 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 ST20Q9HBF5 79 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 TMEM14BQ9NUH8 114 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SPCS1Q9Y6A9 102 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 R4GMQ9 66 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 ARL2-SNX15V9GYD0 113 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 V9GYV3 84 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 SHPRHQ149N8 1683 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 LRRC9Q6ZRR7 1453 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 ABCA12Q86UK0 2595 aa0.48□□□□□ -2.33
VPS35-207ENST00000568191 PKD1L3Q7Z443 1732 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 C5P01031 1676 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ALKQ9UM73 1620 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 TRAV1-2A0A0B4J238 106 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 CTXND1A0A1B0GTU2 59 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 FAM223BA6NKX1 122 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ZNF815PA8K554 130 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 C10orf142B7Z368 130 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 F2Z2F3 143 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 F8VRH5 84 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 F8WEM9 126 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 M0R135 149 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 NCR3O14931 201 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 BCE1O60756 84 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 SNRPFP62306 86 aaKnown RBP0.47□□□□□ -2.33
VPS35-207ENST00000568191 WFDC2Q14508 124 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ADIRFQ15847 76 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 NMSQ5H8A3 153 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 LINC00575Q6W349 94 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 BAGE3Q86Y29 109 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 BAGE2Q86Y30 109 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 Q96NJ1 140 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 WFDC6Q9BQY6 131 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 NEXMIFQ5QGS0 1516 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ZMYM4Q5VZL5 1548 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 KCPQ6ZWJ8 1503 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 UGGT2Q9NYU1 1516 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 PLXNB2O15031 1838 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 PAPPA2Q9BXP8 1791 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 NCOA2Q15596 1464 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 LRRC37A2A6NM11 1700 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ITSN1Q15811 1721 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 KNDC1Q76NI1 1749 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 ANKARQ7Z5J8 1434 aa0.47□□□□□ -2.33
VPS35-207ENST00000568191 AHNAKQ09666 5890 aaKnown RBP0.46□□□□□ -2.34
VPS35-207ENST00000568191 MROH1Q8NDA8 1641 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 RAPGEF6Q8TEU7 1601 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 AKAP6Q13023 2319 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 KNL1Q8NG31 2342 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms