RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SPAG11BQ08648 103 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 GAGE2BQ13066 116 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 TMEM136Q6ZRR5 245 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 ORMDL3Q8N138 153 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 C2orf48Q96LS8 159 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 PRELID3AQ96N28 172 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 SPANXA1Q9NS26 97 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 PLA2G2DQ9UNK4 145 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 A0A0J9YXV3 536 aa6.72□□□□□ -1.33
VPS39-208ENST00000564994 APOMO95445 188 aa6.72□□□□□ -1.33
VPS39-208ENST00000564994 LRP2P98164 4655 aa6.71□□□□□ -1.33
VPS39-208ENST00000564994 IFITM10A6NMD0 228 aa6.71□□□□□ -1.34
VPS39-208ENST00000564994 PNRC1Q12796 327 aaPredicted RBP6.71□□□□□ -1.34
VPS39-208ENST00000564994 ORAOV1Q8WV07 137 aa6.71□□□□□ -1.34
VPS39-208ENST00000564994 IGLV4-3A0A075B6K6 122 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 LOC389332A0A1B0GUA5 103 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 PRSS47A8MTI9 375 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 SRSF9Q13242 221 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS39-208ENST00000564994 C9orf116Q5BN46 136 aaPredicted RBP6.7□□□□□ -1.34
VPS39-208ENST00000564994 OR10D4PQ8NGN7 298 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 LINC01600Q96MT4 127 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 PYGO1Q9Y3Y4 419 aa6.7□□□□□ -1.34
VPS39-208ENST00000564994 MT-ND4LP03901 98 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 RAB5AP20339 215 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 IFI27P40305 119 aaPredicted RBP6.69□□□□□ -1.34
VPS39-208ENST00000564994 RPL18AQ02543 176 aaKnown RBP6.69□□□□□ -1.34
VPS39-208ENST00000564994 RNF151Q2KHN1 245 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 LINC00242Q5T6M2 205 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 C10orf25Q5T742 122 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 Q6ZRP5 223 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 ANAPC16Q96DE5 110 aa6.69□□□□□ -1.34
VPS39-208ENST00000564994 MRPL35Q9NZE8 188 aaKnown RBP6.69□□□□□ -1.34
VPS39-208ENST00000564994 RAB14P61106 215 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 ODF1Q14990 250 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 SPINK6Q6UWN8 80 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 UNQ6190/PRO20217Q6UXQ8 127 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 MAP1LC3AQ9H492 121 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 LAMTOR2Q9Y2Q5 125 aa6.68□□□□□ -1.34
VPS39-208ENST00000564994 A0A087WZ39 114 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 KIAA0087Q14695 138 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 ZC2HC1BQ5TFG8 222 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 PHF5AQ7RTV0 110 aaKnown RBP6.67□□□□□ -1.34
VPS39-208ENST00000564994 Q8N8P6 123 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 TMEM141Q96I45 108 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 C6orf48Q9UBA6 75 aa6.67□□□□□ -1.34
VPS39-208ENST00000564994 TGIF2-C20orf24A0A0A6YYL0 155 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 F8WDY8 70 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 NDUFA1O15239 70 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 ADCYAP1P18509 176 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 UBE2D1P51668 147 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 CLLU1Q5K131 121 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 C2orf66Q6UXQ4 117 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 LINC00173Q6ZV60 143 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 PSORS1C2Q9UIG4 136 aa6.66□□□□□ -1.34
VPS39-208ENST00000564994 FAM168BA1KXE4 195 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 TLX1NBP0CAT3 122 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 KRTAP10-8P60410 259 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 TEX43Q6ZNM6 134 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 IMMP2LQ96T52 175 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 AMELXQ99217 191 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 CYSLTR1Q9Y271 337 aa6.65□□□□□ -1.34
VPS39-208ENST00000564994 IGIPA6NJ69 53 aa6.64□□□□□ -1.35
VPS39-208ENST00000564994 REG3GQ6UW15 175 aa6.64□□□□□ -1.35
VPS39-208ENST00000564994 C2orf82Q6UX34 121 aa6.64□□□□□ -1.35
VPS39-208ENST00000564994 KRTAP11-1Q8IUC1 163 aa6.64□□□□□ -1.35
VPS39-208ENST00000564994 KRTAP7-1Q8IUC3 87 aa6.64□□□□□ -1.35
VPS39-208ENST00000564994 MT-ND6P03923 174 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 IFITM2Q01629 132 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 GAGE2EQ4V326 116 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 ORMDL2Q53FV1 153 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 C2orf88Q9BSF0 95 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 CTDSP1Q9GZU7 261 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 GAGE2DQ9UEU5 116 aa6.63□□□□□ -1.35
VPS39-208ENST00000564994 TMEM218A2RU14 115 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 K7EMI3 77 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 KIAA1644Q3SXP7 199 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 C1orf137Q5JT78 98 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 Q6ZN92 141 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 LINC01561Q8N1V8 128 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 VCX2Q9H322 139 aa6.62□□□□□ -1.35
VPS39-208ENST00000564994 NXT2Q9NPJ8 142 aaKnown RBP6.62□□□□□ -1.35
VPS39-208ENST00000564994 TRBV30A0A0K0K1B3 111 aa6.61□□□□□ -1.35
VPS39-208ENST00000564994 NPSP0C0P6 89 aa6.61□□□□□ -1.35
VPS39-208ENST00000564994 FAM19A5Q7Z5A7 132 aaPredicted RBP6.61□□□□□ -1.35
VPS39-208ENST00000564994 FAM19A3Q7Z5A8 133 aa6.61□□□□□ -1.35
VPS39-208ENST00000564994 NDUFC2-KCTD14E9PQ53 114 aa6.6□□□□□ -1.35
VPS39-208ENST00000564994 C9orf129Q5T035 196 aaKnown RBP6.6□□□□□ -1.35
VPS39-208ENST00000564994 UQCC3Q6UW78 93 aa6.6□□□□□ -1.35
VPS39-208ENST00000564994 RNF213Q63HN8 5207 aa6.6□□□□□ -1.35
VPS39-208ENST00000564994 IGLV7-43P04211 117 aa6.59□□□□□ -1.35
VPS39-208ENST00000564994 TOMM6Q96B49 74 aa6.59□□□□□ -1.35
VPS39-208ENST00000564994 TIMM17AQ99595 171 aa6.59□□□□□ -1.35
VPS39-208ENST00000564994 CDKN2A-AS1Q9UH64 79 aa6.59□□□□□ -1.35
VPS39-208ENST00000564994 TRAV9-1A0A075B6T8 112 aa6.58□□□□□ -1.36
VPS39-208ENST00000564994 PACRGQ96M98 296 aaPredicted RBP6.58□□□□□ -1.36
VPS39-208ENST00000564994 SEC11CQ9BY50 192 aa6.58□□□□□ -1.36
VPS39-208ENST00000564994 TOMM7Q9P0U1 55 aa6.58□□□□□ -1.36
VPS39-208ENST00000564994 LPAP08519 4548 aa6.58□□□□□ -1.36
VPS39-208ENST00000564994 LINC01546A6NGU7 62 aa6.57□□□□□ -1.36
VPS39-208ENST00000564994 M0QXV9 152 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms