RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 TMEM223A0PJW6 202 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 HSBP1L1C9JCN9 74 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 SS18Q15532 418 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 LINC00469Q8N7U9 141 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 Q9H8V8 135 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 CDKN2A-AS1Q9UH64 79 aa9.15□□□□□ -0.94
VPS39-206ENST00000562662 CRPP02741 224 aa9.14□□□□□ -0.95
VPS39-206ENST00000562662 UBE2WQ96B02 151 aa9.14□□□□□ -0.95
VPS39-206ENST00000562662 IGHV3OR16-9A0A0B4J2B5 98 aa9.13□□□□□ -0.95
VPS39-206ENST00000562662 CHCHD10Q8WYQ3 142 aaPredicted RBP9.13□□□□□ -0.95
VPS39-206ENST00000562662 IGLV10-54A0A075B6I4 117 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 IGKV2D-26A0A0A0MRZ7 120 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 TRAV8-4A0A0B4J246 113 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 IBA57-AS1B1ANH7 110 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 E9PLD3 99 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 XCL1P47992 114 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 HERVK_113P61574 105 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 MIAQ16674 131 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 CASC10Q5T4H9 136 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 DNAH10Q8IVF4 4471 aa9.12□□□□□ -0.95
VPS39-206ENST00000562662 C3orf84H3BNL1 204 aa9.11□□□□□ -0.95
VPS39-206ENST00000562662 H3BRM9 83 aa9.11□□□□□ -0.95
VPS39-206ENST00000562662 SPINK8P0C7L1 97 aa9.11□□□□□ -0.95
VPS39-206ENST00000562662 CD164L2Q6UWJ8 174 aa9.11□□□□□ -0.95
VPS39-206ENST00000562662 C10orf126Q8N4M7 172 aa9.11□□□□□ -0.95
VPS39-206ENST00000562662 KMT2AQ03164 3969 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 A0A087WZ39 114 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 TRAV8-3A0A0A6YYJ7 113 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 SMIM1B2RUZ4 78 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 K7EP13 123 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 FOXI1Q12951 378 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 KRTAP26-1Q6PEX3 210 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 KRTAP1-5Q9BYS1 174 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 PRO1933Q9H354 126 aa9.1□□□□□ -0.95
VPS39-206ENST00000562662 IGHV1-58A0A0C4DH39 117 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 IGLV5-39A0A0G2JS06 123 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 GAGE12HA6NDE8 117 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 LEPROTO15243 131 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 NMUP48645 174 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 TSPEAR-AS2P59090 65 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 C5orf38Q86SI9 138 aa9.09□□□□□ -0.95
VPS39-206ENST00000562662 IGHV3-64A0A075B6Q5 118 aa9.08□□□□□ -0.96
VPS39-206ENST00000562662 COX8AP10176 69 aa9.08□□□□□ -0.96
VPS39-206ENST00000562662 PCP2Q8IVA1 136 aa9.08□□□□□ -0.96
VPS39-206ENST00000562662 LINC01561Q8N1V8 128 aa9.08□□□□□ -0.96
VPS39-206ENST00000562662 C14orf144Q96I85 54 aa9.08□□□□□ -0.96
VPS39-206ENST00000562662 PLEKHB2Q96CS7 222 aa9.07□□□□□ -0.96
VPS39-206ENST00000562662 TTTY13Q9BZ97 58 aa9.07□□□□□ -0.96
VPS39-206ENST00000562662 Q9HAA7 133 aa9.07□□□□□ -0.96
VPS39-206ENST00000562662 TP73-AS1Q9UF72 201 aa9.07□□□□□ -0.96
VPS39-206ENST00000562662 COX7A2LO14548 114 aa9.06□□□□□ -0.96
VPS39-206ENST00000562662 C1orf43Q9BWL3 253 aa9.06□□□□□ -0.96
VPS39-206ENST00000562662 DNAH2Q9P225 4427 aa9.06□□□□□ -0.96
VPS39-206ENST00000562662 IGKV2D-24A0A075B6R9 120 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 NBDYA0A0U1RRE5 68 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 TSTD3H0UI37 97 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 J3QQQ9 107 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 BOD1L2Q8IYS8 172 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 MAPKAPK5-AS1Q8N8E1 139 aa9.05□□□□□ -0.96
VPS39-206ENST00000562662 DLEU1O43261 78 aa9.04□□□□□ -0.96
VPS39-206ENST00000562662 TTC32Q5I0X7 151 aa9.04□□□□□ -0.96
VPS39-206ENST00000562662 SLC25A34Q6PIV7 304 aa9.04□□□□□ -0.96
VPS39-206ENST00000562662 UQCR10Q9UDW1 63 aa9.04□□□□□ -0.96
VPS39-206ENST00000562662 LGALS3P17931 250 aaKnown RBP9.03□□□□□ -0.96
VPS39-206ENST00000562662 LINC00476Q8WZB0 136 aa9.03□□□□□ -0.96
VPS39-206ENST00000562662 RMI2Q96E14 147 aa9.03□□□□□ -0.96
VPS39-206ENST00000562662 MIEN1Q9BRT3 115 aa9.03□□□□□ -0.96
VPS39-206ENST00000562662 SACSQ9NZJ4 4579 aa9.03□□□□□ -0.96
VPS39-206ENST00000562662 MYMXA0A1B0GTQ4 84 aa9.02□□□□□ -0.97
VPS39-206ENST00000562662 MALP21145 153 aa9.02□□□□□ -0.97
VPS39-206ENST00000562662 COX7B2Q8TF08 81 aa9.02□□□□□ -0.97
VPS39-206ENST00000562662 ZNF815PA8K554 130 aa9.01□□□□□ -0.97
VPS39-206ENST00000562662 ORAOV1Q8WV07 137 aa9.01□□□□□ -0.97
VPS39-206ENST00000562662 APOMO95445 188 aa9□□□□□ -0.97
VPS39-206ENST00000562662 LY6G6CO95867 125 aa9□□□□□ -0.97
VPS39-206ENST00000562662 KIAA0087Q14695 138 aa9□□□□□ -0.97
VPS39-206ENST00000562662 C2orf91Q6ZV80 131 aa9□□□□□ -0.97
VPS39-206ENST00000562662 Q8IZM0 81 aa9□□□□□ -0.97
VPS39-206ENST00000562662 TOMM7Q9P0U1 55 aa9□□□□□ -0.97
VPS39-206ENST00000562662 NDUFA12Q9UI09 145 aa9□□□□□ -0.97
VPS39-206ENST00000562662 NDUFA1O15239 70 aa8.99□□□□□ -0.97
VPS39-206ENST00000562662 Q6ZR54 194 aa8.99□□□□□ -0.97
VPS39-206ENST00000562662 C15orf56Q8N910 161 aa8.99□□□□□ -0.97
VPS39-206ENST00000562662 ZNF625Q96I27 306 aaPredicted RBP8.99□□□□□ -0.97
VPS39-206ENST00000562662 COX11Q9Y6N1 276 aa8.99□□□□□ -0.97
VPS39-206ENST00000562662 FRAS1Q86XX4 4008 aa8.99□□□□□ -0.97
VPS39-206ENST00000562662 M0R2N4 97 aa8.98□□□□□ -0.97
VPS39-206ENST00000562662 DDTP30046 118 aa8.98□□□□□ -0.97
VPS39-206ENST00000562662 SPAG11BQ08648 103 aa8.98□□□□□ -0.97
VPS39-206ENST00000562662 TM2D2Q9BX73 214 aa8.98□□□□□ -0.97
VPS39-206ENST00000562662 DNAH17Q9UFH2 4485 aa8.97□□□□□ -0.97
VPS39-206ENST00000562662 PCP4L1A6NKN8 68 aa8.97□□□□□ -0.97
VPS39-206ENST00000562662 PRSS2P07478 247 aa8.97□□□□□ -0.97
VPS39-206ENST00000562662 HNRNPA3P51991 378 aaKnown RBP8.97□□□□□ -0.97
VPS39-206ENST00000562662 A0A0J9YXY3 114 aa8.96□□□□□ -0.98
VPS39-206ENST00000562662 C6orf226Q5I0X4 101 aa8.96□□□□□ -0.98
VPS39-206ENST00000562662 Q6ZRN7 208 aaPredicted RBP8.96□□□□□ -0.98
VPS39-206ENST00000562662 HIGD1BQ9P298 99 aa8.96□□□□□ -0.98
VPS39-206ENST00000562662 GVQW2A0A096LPI5 108 aaPredicted RBP8.95□□□□□ -0.98
VPS39-206ENST00000562662 CXCL5P42830 114 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms