RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MUC2Q02817 5179 aa9.88□□□□□ -0.83
CLN3-208ENST00000561505 FAM168BA1KXE4 195 aa9.87□□□□□ -0.83
CLN3-208ENST00000561505 TCAPO15273 167 aa9.87□□□□□ -0.83
CLN3-208ENST00000561505 MRPL51Q4U2R6 128 aaKnown RBP9.87□□□□□ -0.83
CLN3-208ENST00000561505 A0A087WZ39 114 aa9.86□□□□□ -0.83
CLN3-208ENST00000561505 NDUFA1O15239 70 aa9.86□□□□□ -0.83
CLN3-208ENST00000561505 KIAA0087Q14695 138 aa9.86□□□□□ -0.83
CLN3-208ENST00000561505 C6orf48Q9UBA6 75 aa9.86□□□□□ -0.83
CLN3-208ENST00000561505 SRP19P09132 144 aaKnown RBP9.85□□□□□ -0.83
CLN3-208ENST00000561505 ALKAL2Q6UX46 152 aa9.85□□□□□ -0.83
CLN3-208ENST00000561505 UNQ6190/PRO20217Q6UXQ8 127 aa9.85□□□□□ -0.83
CLN3-208ENST00000561505 ORAOV1Q8WV07 137 aa9.85□□□□□ -0.83
CLN3-208ENST00000561505 SMDT1Q9H4I9 107 aa9.85□□□□□ -0.83
CLN3-208ENST00000561505 SPANXA1Q9NS26 97 aa9.85□□□□□ -0.83
CLN3-208ENST00000561505 ZNF727A8MUV8 499 aa9.84□□□□□ -0.83
CLN3-208ENST00000561505 RPL39P62891 51 aaKnown RBP9.84□□□□□ -0.83
CLN3-208ENST00000561505 FAM74A3Q4VXF1 159 aa9.83□□□□□ -0.84
CLN3-208ENST00000561505 NAT8BQ9UHF3 227 aa9.83□□□□□ -0.84
CLN3-208ENST00000561505 SMIM27A0A1W2PRY6 76 aa9.82□□□□□ -0.84
CLN3-208ENST00000561505 CEBPGP53567 150 aa9.82□□□□□ -0.84
CLN3-208ENST00000561505 CARHSP1Q9Y2V2 147 aaKnown RBP9.82□□□□□ -0.84
CLN3-208ENST00000561505 A0A1B0GW15 77 aa9.81□□□□□ -0.84
CLN3-208ENST00000561505 TNFRSF6BO95407 300 aa9.81□□□□□ -0.84
CLN3-208ENST00000561505 RPL13AP40429 203 aaKnown RBP9.81□□□□□ -0.84
CLN3-208ENST00000561505 SMIM2Q9BVW6 85 aa9.81□□□□□ -0.84
CLN3-208ENST00000561505 EIF5A2Q9GZV4 153 aaKnown RBP9.81□□□□□ -0.84
CLN3-208ENST00000561505 TRBV30A0A0K0K1B3 111 aa9.8□□□□□ -0.84
CLN3-208ENST00000561505 PYGO1Q9Y3Y4 419 aa9.8□□□□□ -0.84
CLN3-208ENST00000561505 CKS2P33552 79 aa9.79□□□□□ -0.84
CLN3-208ENST00000561505 RPL23P62829 140 aaKnown RBP9.79□□□□□ -0.84
CLN3-208ENST00000561505 HBBP68871 147 aa9.79□□□□□ -0.84
CLN3-208ENST00000561505 FAM19A5Q7Z5A7 132 aaPredicted RBP9.79□□□□□ -0.84
CLN3-208ENST00000561505 LINC01561Q8N1V8 128 aa9.79□□□□□ -0.84
CLN3-208ENST00000561505 IFITM10A6NMD0 228 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 NDUFC2-KCTD14E9PQ53 114 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 M0QXV9 152 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 GAGE2EQ4V326 116 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 C9orf129Q5T035 196 aaKnown RBP9.78□□□□□ -0.84
CLN3-208ENST00000561505 LINC00242Q5T6M2 205 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 GAGE2DQ9UEU5 116 aa9.78□□□□□ -0.84
CLN3-208ENST00000561505 A0A1B0GXF2 115 aa9.77□□□□□ -0.85
CLN3-208ENST00000561505 TGIF2-C20orf24A0A0A6YYL0 155 aa9.76□□□□□ -0.85
CLN3-208ENST00000561505 NPYP01303 97 aa9.76□□□□□ -0.85
CLN3-208ENST00000561505 PPBPP02775 128 aa9.76□□□□□ -0.85
CLN3-208ENST00000561505 PRSS47A8MTI9 375 aa9.75□□□□□ -0.85
CLN3-208ENST00000561505 D6R8Y8 96 aa9.75□□□□□ -0.85
CLN3-208ENST00000561505 ZNF861PO60384 105 aa9.75□□□□□ -0.85
CLN3-208ENST00000561505 IGLV4-3A0A075B6K6 122 aa9.74□□□□□ -0.85
CLN3-208ENST00000561505 PRR4Q16378 134 aa9.74□□□□□ -0.85
CLN3-208ENST00000561505 LCE2AQ5TA79 106 aaPredicted RBP9.74□□□□□ -0.85
CLN3-208ENST00000561505 C2orf82Q6UX34 121 aa9.74□□□□□ -0.85
CLN3-208ENST00000561505 UBE2D1P51668 147 aa9.73□□□□□ -0.85
CLN3-208ENST00000561505 UBE2BP63146 152 aa9.73□□□□□ -0.85
CLN3-208ENST00000561505 KRTAP9-2Q9BYQ4 174 aa9.73□□□□□ -0.85
CLN3-208ENST00000561505 NAT8Q9UHE5 227 aa9.73□□□□□ -0.85
CLN3-208ENST00000561505 C9JQL5 133 aa9.72□□□□□ -0.85
CLN3-208ENST00000561505 F8W036 122 aa9.72□□□□□ -0.85
CLN3-208ENST00000561505 S100A8P05109 93 aa9.72□□□□□ -0.85
CLN3-208ENST00000561505 IFI27P40305 119 aaPredicted RBP9.72□□□□□ -0.85
CLN3-208ENST00000561505 FAM19A3Q7Z5A8 133 aa9.72□□□□□ -0.85
CLN3-208ENST00000561505 NUPR1O60356 82 aa9.71□□□□□ -0.86
CLN3-208ENST00000561505 AKAP14Q86UN6 197 aa9.71□□□□□ -0.86
CLN3-208ENST00000561505 A0A0U1RQV1 116 aa9.7□□□□□ -0.86
CLN3-208ENST00000561505 ADIRFQ15847 76 aa9.7□□□□□ -0.86
CLN3-208ENST00000561505 LINC00173Q6ZV60 143 aa9.7□□□□□ -0.86
CLN3-208ENST00000561505 TMEM141Q96I45 108 aa9.7□□□□□ -0.86
CLN3-208ENST00000561505 PACRGQ96M98 296 aaPredicted RBP9.7□□□□□ -0.86
CLN3-208ENST00000561505 AMELXQ99217 191 aa9.7□□□□□ -0.86
CLN3-208ENST00000561505 ORMDL3Q8N138 153 aa9.69□□□□□ -0.86
CLN3-208ENST00000561505 TP73-AS1Q9UF72 201 aa9.69□□□□□ -0.86
CLN3-208ENST00000561505 C22orf24Q9Y442 160 aa9.69□□□□□ -0.86
CLN3-208ENST00000561505 NPSP0C0P6 89 aa9.68□□□□□ -0.86
CLN3-208ENST00000561505 RAB5AP20339 215 aa9.68□□□□□ -0.86
CLN3-208ENST00000561505 MRPL54Q6P161 138 aaKnown RBP9.68□□□□□ -0.86
CLN3-208ENST00000561505 TMEM136Q6ZRR5 245 aa9.68□□□□□ -0.86
CLN3-208ENST00000561505 Q6ZN92 141 aa9.67□□□□□ -0.86
CLN3-208ENST00000561505 FAT4Q6V0I7 4981 aa9.67□□□□□ -0.86
CLN3-208ENST00000561505 A0A087X002 238 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 LBHQ53QV2 105 aaPredicted RBP9.66□□□□□ -0.86
CLN3-208ENST00000561505 C2orf66Q6UXQ4 117 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 TEX43Q6ZNM6 134 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 ATP5L2Q7Z4Y8 100 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 Q8IZM0 81 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 PRELID3AQ96N28 172 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 LAMTOR2Q9Y2Q5 125 aa9.66□□□□□ -0.86
CLN3-208ENST00000561505 SRSF3P84103 164 aaKnown RBP9.65□□□□□ -0.86
CLN3-208ENST00000561505 CTDSP1Q9GZU7 261 aa9.65□□□□□ -0.86
CLN3-208ENST00000561505 IGIPA6NJ69 53 aa9.64□□□□□ -0.87
CLN3-208ENST00000561505 K7EMI3 77 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 BCE1O60756 84 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 C6orf226Q5I0X4 101 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 ZC2HC1BQ5TFG8 222 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 C2orf88Q9BSF0 95 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 XAGE1AQ9HD64 81 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 CYSLTR1Q9Y271 337 aa9.62□□□□□ -0.87
CLN3-208ENST00000561505 TSPAN13O95857 204 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 PRSS2P07478 247 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 CRYGAP11844 174 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 RPL28P46779 137 aaKnown RBP9.61□□□□□ -0.87
CLN3-208ENST00000561505 CKS1BP61024 79 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms