RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TRBV20-1A0A075B6N2 111 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.79□□□□□ -1.16
USP3-218ENST00000560202 IGKV2D-26A0A0A0MRZ7 120 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 IGKV2-29A2NJV5 120 aaPredicted RBP7.79□□□□□ -1.16
USP3-218ENST00000560202 IGIPA6NJ69 53 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 K7ERJ3 54 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 SPINK8P0C7L1 97 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 SH2D6Q7Z4S9 175 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 HIST1H4GQ99525 98 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 A0A087WX48 190 aa7.78□□□□□ -1.16
USP3-218ENST00000560202 TMEM141Q96I45 108 aa7.78□□□□□ -1.16
USP3-218ENST00000560202 TIMM17AQ99595 171 aa7.78□□□□□ -1.16
USP3-218ENST00000560202 TMEM243Q9BU79 118 aa7.78□□□□□ -1.16
USP3-218ENST00000560202 CDIP1Q9H305 208 aa7.77□□□□□ -1.17
USP3-218ENST00000560202 UBE2D4Q9Y2X8 147 aa7.77□□□□□ -1.17
USP3-218ENST00000560202 PYGO1Q9Y3Y4 419 aa7.77□□□□□ -1.17
USP3-218ENST00000560202 MYMXA0A1B0GTQ4 84 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 Q6ZUT4 128 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 H7C423 109 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 UBE2L6O14933 153 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 GAGE6Q13070 117 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 CEMP1Q6PRD7 247 aaPredicted RBP7.76□□□□□ -1.17
USP3-218ENST00000560202 TEN1Q86WV5 123 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 TIMM21Q9BVV7 248 aa7.76□□□□□ -1.17
USP3-218ENST00000560202 F8VRH5 84 aa7.75□□□□□ -1.17
USP3-218ENST00000560202 CFAP161Q6P656 301 aa7.75□□□□□ -1.17
USP3-218ENST00000560202 BAALCQ8WXS3 180 aa7.75□□□□□ -1.17
USP3-218ENST00000560202 OPRPNQ99935 248 aaPredicted RBP7.75□□□□□ -1.17
USP3-218ENST00000560202 CHCHD5Q9BSY4 110 aa7.75□□□□□ -1.17
USP3-218ENST00000560202 STAB2Q8WWQ8 2551 aa7.74□□□□□ -1.17
USP3-218ENST00000560202 IGLV4-3A0A075B6K6 122 aa7.74□□□□□ -1.17
USP3-218ENST00000560202 LYPD5Q6UWN5 251 aa7.74□□□□□ -1.17
USP3-218ENST00000560202 FAM104AQ969W3 186 aa7.74□□□□□ -1.17
USP3-218ENST00000560202 UBE2D1P51668 147 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 TIRAPP58753 221 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 PAPPA-AS1Q5QFB9 102 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 LELP1Q5T871 98 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 ZFAND6Q6FIF0 208 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 DGAT2L7PQ6IED9 249 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 C15orf53Q8NAA6 179 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 ANAPC13Q9BS18 74 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 MRPL35Q9NZE8 188 aaKnown RBP7.73□□□□□ -1.17
USP3-218ENST00000560202 CSDC2Q9Y534 153 aaKnown RBP7.73□□□□□ -1.17
USP3-218ENST00000560202 FBN3Q75N90 2809 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 PRSS29PA6NIE9 313 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 MRPS36P82909 103 aaKnown RBP7.73□□□□□ -1.17
USP3-218ENST00000560202 PMVKQ15126 192 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 Q6Q795 121 aa7.73□□□□□ -1.17
USP3-218ENST00000560202 MAPKAPK5-AS1Q8N8E1 139 aa7.72□□□□□ -1.17
USP3-218ENST00000560202 TMEM101Q96IK0 257 aa7.72□□□□□ -1.17
USP3-218ENST00000560202 LINC01600Q96MT4 127 aa7.72□□□□□ -1.17
USP3-218ENST00000560202 PGPEP1Q9NXJ5 209 aa7.72□□□□□ -1.17
USP3-218ENST00000560202 ESRGQ1W209 222 aa7.71□□□□□ -1.18
USP3-218ENST00000560202 RNASE13Q5GAN3 156 aaKnown RBP7.71□□□□□ -1.18
USP3-218ENST00000560202 AMELXQ99217 191 aa7.71□□□□□ -1.18
USP3-218ENST00000560202 SPANXDQ9BXN6 97 aa7.71□□□□□ -1.18
USP3-218ENST00000560202 CDC42SE2Q9NRR3 84 aa7.71□□□□□ -1.18
USP3-218ENST00000560202 IGLV4-60A0A075B6I1 120 aa7.7□□□□□ -1.18
USP3-218ENST00000560202 A0A1B0GUV1 79 aa7.7□□□□□ -1.18
USP3-218ENST00000560202 MT-ATP8P03928 68 aa7.7□□□□□ -1.18
USP3-218ENST00000560202 SMCPP49901 116 aaPredicted RBP7.7□□□□□ -1.18
USP3-218ENST00000560202 XGP55808 180 aa7.7□□□□□ -1.18
USP3-218ENST00000560202 TTTY13Q9BZ97 58 aa7.7□□□□□ -1.18
USP3-218ENST00000560202 DYNC2H1Q8NCM8 4307 aaKnown RBP7.69□□□□□ -1.18
USP3-218ENST00000560202 HERVK_113P61574 105 aa7.69□□□□□ -1.18
USP3-218ENST00000560202 NFE4Q86UQ8 179 aa7.69□□□□□ -1.18
USP3-218ENST00000560202 NUPR2A6NF83 97 aa7.68□□□□□ -1.18
USP3-218ENST00000560202 IGLV4-69A0A075B6H9 119 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 SCGB1C2P0DMR2 95 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 PSMB2P49721 201 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 KLK5Q9Y337 293 aaPredicted RBP7.67□□□□□ -1.18
USP3-218ENST00000560202 GAGE2BQ13066 116 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 SRSF9Q13242 221 aaKnown RBP eCLIP7.67□□□□□ -1.18
USP3-218ENST00000560202 GAGE2EQ4V326 116 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 WFDC10BQ8IUB3 73 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 Q8N3U1 123 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 GAGE2DQ9UEU5 116 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 APLNQ9ULZ1 77 aa7.67□□□□□ -1.18
USP3-218ENST00000560202 DNAH7Q8WXX0 4024 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 LOC107984156A0A0G2JMH3 177 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 A0A0J9YXV3 536 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 C11orf86A6NJI1 115 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 ZNF815PA8K554 130 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 CCL18P55774 89 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 SCGB1D4Q6XE38 83 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 ARL17AQ8IVW1 177 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 CARD19Q96LW7 228 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 LINC00588Q9Y4M8 146 aa7.66□□□□□ -1.18
USP3-218ENST00000560202 TRAV13-1A0A0B4J241 112 aa7.65□□□□□ -1.18
USP3-218ENST00000560202 SNCGO76070 127 aa7.65□□□□□ -1.18
USP3-218ENST00000560202 C10orf126Q8N4M7 172 aa7.65□□□□□ -1.18
USP3-218ENST00000560202 ANGP03950 147 aaKnown RBP7.64□□□□□ -1.19
USP3-218ENST00000560202 IGKV3OR2-268A0A0C4DH90 116 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 TINCRA0A1B0GVN0 87 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 IGHV3-30P01768 117 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 IGHV3-33P01772 117 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 IGHV3-30-3P0DP02 117 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 IGHV3-30-5P0DP03 117 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 IFITM1P13164 125 aa7.63□□□□□ -1.19
USP3-218ENST00000560202 RPL13AP40429 203 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms