RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IGHV5-10-1A0A0J9YXX1 117 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 JMJD7-PLA2G4BH0Y9G9 81 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 NDUFA1O15239 70 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 DNAL4O96015 105 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 IGKV2D-40P01614 121 aaPredicted RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 TFF1P04155 84 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV1-8P0DP01 117 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV3-30-3P0DP02 117 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 RPL28P46779 137 aaKnown RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 CIRBPQ14011 172 aaKnown RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 C10orf55Q5SWW7 151 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 FAM223AQ8IWN6 122 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 BRK1Q8WUW1 75 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 RNASE6Q93091 150 aaKnown RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 LEAP2Q969E1 77 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 LINC00846Q9NV44 126 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 NDUFA12Q9UI09 145 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 KIAA0100Q14667 2235 aaKnown RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 GOLGB1Q14789 3259 aaKnown RBP1.66□□□□□ -2.14
VPS13C-208ENST00000559119 PCNX2A6NKB5 2137 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 UNC13CQ8NB66 2214 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 IGLV3-9A0A075B6K5 115 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV21A0A0B4J279 112 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV1-3A0A0C4DH29 117 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 IGKV3D-7A0A0C4DH55 119 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 IGKV2-24A0A0C4DH68 120 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 A0A0U1RQV1 116 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 M0R1W7 72 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 NDUFB3O43676 98 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 TRBV12-3P01733 135 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 BLCAPP62952 87 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 Q1T7F1 81 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 DEFB133Q30KQ1 61 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 FAM19A3Q7Z5A8 133 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 VMO1Q7Z5L0 202 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 C20orf197Q8N268 126 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 Q8N2B8 174 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 LY6G5BQ8NDX9 201 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 WFDC11Q8NEX6 87 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 Q8TAT8 98 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 LINC00308Q8TCZ7 52 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 RPL39LQ96EH5 51 aaKnown RBP1.66□□□□□ -2.14
VPS13C-208ENST00000559119 ZNRD1Q9P1U0 126 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 TET1Q8NFU7 2136 aa1.66□□□□□ -2.14
VPS13C-208ENST00000559119 ZNF407Q9C0G0 2248 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 A0A087WVE0 104 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV3-21A0A0B4J1V1 117 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 A0A0J9YXV3 536 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 A8MUU9 505 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 H3BQ85 93 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 BUB1B-PAK6H3BSN5 160 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 CTSGP08311 255 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 RNASE3P12724 160 aaKnown RBP1.65□□□□□ -2.15
VPS13C-208ENST00000559119 MIFP14174 115 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 RPL39P62891 51 aaKnown RBP1.65□□□□□ -2.15
VPS13C-208ENST00000559119 RBM3P98179 157 aaKnown RBP1.65□□□□□ -2.15
VPS13C-208ENST00000559119 ESRGQ1W209 222 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 DYNLRB2Q8TF09 96 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 ITLN2Q8WWU7 325 aaPredicted RBP1.65□□□□□ -2.15
VPS13C-208ENST00000559119 TM2D3Q9BRN9 247 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 TTTY12Q9BZ98 90 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 UBL5Q9BZL1 73 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 KAAG1Q9UBP8 84 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 PHLDA3Q9Y5J5 127 aa1.65□□□□□ -2.15
VPS13C-208ENST00000559119 RTTNQ86VV8 2226 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 ESPL1Q14674 2120 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 RP1P56715 2156 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 SDK2Q58EX2 2172 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 TRBV7-4A0A0J9YYF1 115 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 C16orf90A8MZG2 172 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 F8WEM9 126 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 M0QY20 66 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 NDUFS5O43920 106 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 MGPP08493 103 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 P0C880 135 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 CD28P10747 220 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 PDE6GP18545 87 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 S100A4P26447 101 aaKnown RBP1.64□□□□□ -2.15
VPS13C-208ENST00000559119 SNRPD3P62318 126 aaKnown RBP1.64□□□□□ -2.15
VPS13C-208ENST00000559119 ZFAND2AQ8N6M9 145 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 C15orf56Q8N910 161 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 C11orf72Q8NBR9 251 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 LINC01560Q8TB33 94 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 ZNF625Q96I27 306 aaPredicted RBP1.64□□□□□ -2.15
VPS13C-208ENST00000559119 ORMDL1Q9P0S3 153 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 LINC00474Q9P2X8 69 aa1.64□□□□□ -2.15
VPS13C-208ENST00000559119 PDE4DIPQ5VU43 2346 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 TRAV23DV6A0A075B6W5 121 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 LOC110117498A0A087WWA1 95 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 TRAV12-3A0A0B4J271 114 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 CLPSL1A2RUU4 121 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 E7EQL1 145 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 TMEM256-PLSCR3K7ERE1 68 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 M0R1B8 84 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 BPY2O14599 106 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 PSPHP1O15172 72 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV1-46P01743 117 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV3-11P01762 117 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 CCL3L1P16619 93 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms