RNA–Protein interactions for RNA: ENST00000558500.5

LRRC28-207, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-207ENST00000558500 SEC61BP60468 96 aaKnown RBP3.89□□□□□ -1.79
LRRC28-207ENST00000558500 ASB16-AS1Q495Z4 193 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 C9orf62Q8N4C0 152 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 LINC00304Q8N9R0 145 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 URB1-AS1Q96HZ7 61 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 MARVELD1Q9BSK0 173 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 PPDPFQ9H3Y8 114 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 SMDT1Q9H4I9 107 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 PAM16Q9Y3D7 125 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 ALG5Q9Y673 324 aa3.89□□□□□ -1.79
LRRC28-207ENST00000558500 TRBV6-5A0A0K0K1A5 114 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 F8WDY8 70 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 NDUFA1O15239 70 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 NUPR1O60356 82 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 PFDN1O60925 122 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 IFNA1P01562 189 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 CTRLP40313 264 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 RPL35P42766 123 aaKnown RBP3.88□□□□□ -1.79
LRRC28-207ENST00000558500 TWIST1Q15672 202 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 TMEM241Q24JQ0 296 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 KRTAP13-2Q52LG2 175 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 TEX261Q6UWH6 196 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 Q75L30 129 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 FAM210AQ96ND0 272 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 CNFNQ9BYD5 112 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 TMEM242Q9NWH2 141 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 ANAPC11Q9NYG5 84 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 C6orf48Q9UBA6 75 aa3.88□□□□□ -1.79
LRRC28-207ENST00000558500 TRAV13-1A0A0B4J241 112 aa3.87□□□□□ -1.79
LRRC28-207ENST00000558500 C7orf77A4D0Y5 90 aa3.87□□□□□ -1.79
LRRC28-207ENST00000558500 RNASE13Q5GAN3 156 aaKnown RBP3.87□□□□□ -1.79
LRRC28-207ENST00000558500 UNQ6190/PRO20217Q6UXQ8 127 aa3.87□□□□□ -1.79
LRRC28-207ENST00000558500 ORAOV1Q8WV07 137 aa3.87□□□□□ -1.79
LRRC28-207ENST00000558500 A0A1B0GV50 99 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 UPK1BO75841 260 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 RPL28P46779 137 aaKnown RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 FOXA3P55318 350 aaPredicted RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 CTAG1AP78358 180 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 IFITM3Q01628 133 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 PNRC1Q12796 327 aaPredicted RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 Q5BKY6 102 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 CENPWQ5EE01 88 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 C9orf129Q5T035 196 aaKnown RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 LINC00242Q5T6M2 205 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 MBD3L1Q8WWY6 194 aa3.86□□□□□ -1.79
LRRC28-207ENST00000558500 RNASE7Q9H1E1 156 aaKnown RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 CSDC2Q9Y534 153 aaKnown RBP3.86□□□□□ -1.79
LRRC28-207ENST00000558500 NDUFC2-KCTD14E9PQ53 114 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 POLR2KP53803 58 aaKnown RBP3.85□□□□□ -1.79
LRRC28-207ENST00000558500 PAPPA-AS1Q5QFB9 102 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 SMIM15Q7Z3B0 74 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 KCNRGQ8N5I3 272 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 LINC00337Q8N6G1 96 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 SFT2D1Q8WV19 159 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 C11orf52Q96A22 123 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 ST20Q9HBF5 79 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 UBE2D4Q9Y2X8 147 aa3.85□□□□□ -1.79
LRRC28-207ENST00000558500 IGHV3OR16-9A0A0B4J2B5 98 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 TRBV27A0A0K0K1C4 114 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 BCE1O60756 84 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 CFC1BP0CG36 223 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 GNG4P50150 75 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 SMAGPQ0VAQ4 97 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 KRTAP13-3Q3SY46 172 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 FAM229BQ4G0N7 80 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 LBHQ53QV2 105 aaPredicted RBP3.84□□□□□ -1.79
LRRC28-207ENST00000558500 LINC00299Q6ZSB3 139 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 Q6ZUT4 128 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 SMIM12Q96EX1 92 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 CYTL1Q9NRR1 136 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 C22orf24Q9Y442 160 aa3.84□□□□□ -1.79
LRRC28-207ENST00000558500 FXYD6-FXYD2A0A087WZ82 144 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 IGLV5-39A0A0G2JS06 123 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 TRBV30A0A0K0K1B3 111 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 RAB19A4D1S5 217 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 CCL20P78556 96 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 MT1HP80294 61 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 KIAA0087Q14695 138 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 FP248Q71RG6 208 aaPredicted RBP3.83□□□□□ -1.8
LRRC28-207ENST00000558500 FAM213BQ8TBF2 198 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 S100ZQ8WXG8 99 aa3.83□□□□□ -1.8
LRRC28-207ENST00000558500 TRBV20OR9-2A0A075B6H5 130 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 IGKV2D-26A0A0A0MRZ7 120 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 FCER1GP30273 86 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 KRTAP19-2Q3LHN2 52 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 PACRGQ96M98 296 aaPredicted RBP3.82□□□□□ -1.8
LRRC28-207ENST00000558500 TIMM21Q9BVV7 248 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 BIN3Q9NQY0 253 aa3.82□□□□□ -1.8
LRRC28-207ENST00000558500 UMAD1C9J7I0 102 aa3.81□□□□□ -1.8
LRRC28-207ENST00000558500 GIPP09681 153 aaPredicted RBP3.81□□□□□ -1.8
LRRC28-207ENST00000558500 KRTAP10-6P60371 365 aaPredicted RBP3.81□□□□□ -1.8
LRRC28-207ENST00000558500 C2orf82Q6UX34 121 aa3.81□□□□□ -1.8
LRRC28-207ENST00000558500 MANBALQ9NQG1 85 aa3.81□□□□□ -1.8
LRRC28-207ENST00000558500 TP73-AS1Q9UF72 201 aa3.81□□□□□ -1.8
LRRC28-207ENST00000558500 KRTAP15-1Q3LI76 137 aa3.8□□□□□ -1.8
LRRC28-207ENST00000558500 MRPL55Q7Z7F7 128 aaKnown RBP3.8□□□□□ -1.8
LRRC28-207ENST00000558500 KRTAP13-1Q8IUC0 172 aa3.8□□□□□ -1.8
LRRC28-207ENST00000558500 LINC00469Q8N7U9 141 aa3.8□□□□□ -1.8
LRRC28-207ENST00000558500 FAM104AQ969W3 186 aa3.8□□□□□ -1.8
LRRC28-207ENST00000558500 GNG13Q9P2W3 67 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms