RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 COX7A2LO14548 114 aa9.27□□□□□ -0.93
VIPAS39-208ENST00000556412 MALP21145 153 aa9.27□□□□□ -0.93
VIPAS39-208ENST00000556412 COA6Q5JTJ3 125 aaKnown RBP9.27□□□□□ -0.93
VIPAS39-208ENST00000556412 HSPB8Q9UJY1 196 aa9.27□□□□□ -0.93
VIPAS39-208ENST00000556412 S100A6P06703 90 aa9.26□□□□□ -0.93
VIPAS39-208ENST00000556412 COX6A2Q02221 97 aa9.26□□□□□ -0.93
VIPAS39-208ENST00000556412 GEMIN7Q9H840 131 aaKnown RBP9.26□□□□□ -0.93
VIPAS39-208ENST00000556412 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.26□□□□□ -0.93
VIPAS39-208ENST00000556412 LINC00469Q8N7U9 141 aa9.26□□□□□ -0.93
VIPAS39-208ENST00000556412 FUSP35637 526 aaKnown RBP eCLIP9.25□□□□□ -0.93
VIPAS39-208ENST00000556412 SEC11AP67812 179 aa9.25□□□□□ -0.93
VIPAS39-208ENST00000556412 HIGD2BQ4VC39 106 aa9.25□□□□□ -0.93
VIPAS39-208ENST00000556412 Q8N814 137 aa9.25□□□□□ -0.93
VIPAS39-208ENST00000556412 CFAP161Q6P656 301 aa9.24□□□□□ -0.93
VIPAS39-208ENST00000556412 IGHV3OR16-9A0A0B4J2B5 98 aa9.24□□□□□ -0.93
VIPAS39-208ENST00000556412 hDV102S1A0JD36 115 aa9.24□□□□□ -0.93
VIPAS39-208ENST00000556412 HERVK_113P63121 156 aa9.24□□□□□ -0.93
VIPAS39-208ENST00000556412 SPATA12Q7Z6I5 190 aa9.24□□□□□ -0.93
VIPAS39-208ENST00000556412 DNAH10Q8IVF4 4471 aa9.23□□□□□ -0.93
VIPAS39-208ENST00000556412 C14orf177Q52M58 125 aa9.23□□□□□ -0.93
VIPAS39-208ENST00000556412 C15orf56Q8N910 161 aa9.23□□□□□ -0.93
VIPAS39-208ENST00000556412 CHAC1Q9BUX1 264 aa9.23□□□□□ -0.93
VIPAS39-208ENST00000556412 CHTOPQ9Y3Y2 248 aaKnown RBP9.23□□□□□ -0.93
VIPAS39-208ENST00000556412 IGHV1-58A0A0C4DH39 117 aa9.22□□□□□ -0.93
VIPAS39-208ENST00000556412 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
VIPAS39-208ENST00000556412 MAP1LC3CQ9BXW4 147 aa9.22□□□□□ -0.93
VIPAS39-208ENST00000556412 A0A1B0GVY2 172 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 APOMO95445 188 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 S100A2P29034 98 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 KRTAP10-2P60368 255 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 FAM19A3Q7Z5A8 133 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 CDKN2A-AS1Q9UH64 79 aa9.21□□□□□ -0.93
VIPAS39-208ENST00000556412 TRAV12-1A0A0B4J245 112 aa9.21□□□□□ -0.94
VIPAS39-208ENST00000556412 PACRGQ96M98 296 aaPredicted RBP9.21□□□□□ -0.94
VIPAS39-208ENST00000556412 IGLV4-69A0A075B6H9 119 aa9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 A0A087WZ39 114 aa9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 IGLC3P0DOY3 106 aa9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 SNRPEP62304 92 aaKnown RBP9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 ORAOV1Q8WV07 137 aa9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 LINC00526Q96FQ7 95 aa9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 MRPL35Q9NZE8 188 aaKnown RBP9.2□□□□□ -0.94
VIPAS39-208ENST00000556412 DNAH17Q9UFH2 4485 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 IGLV5-52A0A0A0MRZ9 124 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 ZNF561-AS1K7EIQ3 104 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 HIST3H2BBQ8N257 126 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 PMCHL2Q9BQD1 86 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 C11orf86A6NJI1 115 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 F8VRH5 84 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 KRTDAPP60985 99 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 TMEM170BQ5T4T1 132 aa9.19□□□□□ -0.94
VIPAS39-208ENST00000556412 GVQW2A0A096LPI5 108 aaPredicted RBP9.18□□□□□ -0.94
VIPAS39-208ENST00000556412 SPAG11BQ08648 103 aa9.18□□□□□ -0.94
VIPAS39-208ENST00000556412 ODF1Q14990 250 aa9.18□□□□□ -0.94
VIPAS39-208ENST00000556412 PGPEP1Q9NXJ5 209 aa9.18□□□□□ -0.94
VIPAS39-208ENST00000556412 IGHV3-64A0A075B6Q5 118 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 H3BRM9 83 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 SYS1-DBNDD2H3BUS1 97 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 SPINK8P0C7L1 97 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 NTN5Q8WTR8 489 aaPredicted RBP9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 TOMM7Q9P0U1 55 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 ZNF22P17026 224 aaPredicted RBP9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 OR10D4PQ8NGN7 298 aa9.17□□□□□ -0.94
VIPAS39-208ENST00000556412 FAT2Q9NYQ8 4349 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 FRAS1Q86XX4 4008 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 PCP4L1A6NKN8 68 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 C16orf90A8MZG2 172 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 C3orf79P0CE67 100 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 HIST1H2BLQ99880 126 aa9.16□□□□□ -0.94
VIPAS39-208ENST00000556412 SMIM1B2RUZ4 78 aa9.15□□□□□ -0.94
VIPAS39-208ENST00000556412 PRSS2P07478 247 aa9.15□□□□□ -0.94
VIPAS39-208ENST00000556412 LINC01620Q4KN68 170 aa9.15□□□□□ -0.94
VIPAS39-208ENST00000556412 C5orf52A6NGY3 159 aa9.15□□□□□ -0.95
VIPAS39-208ENST00000556412 CDPF1Q6NVV7 123 aa9.15□□□□□ -0.95
VIPAS39-208ENST00000556412 LINC01561Q8N1V8 128 aa9.15□□□□□ -0.95
VIPAS39-208ENST00000556412 CAMK2N2Q96S95 79 aa9.15□□□□□ -0.95
VIPAS39-208ENST00000556412 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-208ENST00000556412 DPM2O94777 84 aa9.14□□□□□ -0.95
VIPAS39-208ENST00000556412 SLPIP03973 132 aa9.14□□□□□ -0.95
VIPAS39-208ENST00000556412 PLNP26678 52 aa9.14□□□□□ -0.95
VIPAS39-208ENST00000556412 PET117Q6UWS5 81 aa9.14□□□□□ -0.95
VIPAS39-208ENST00000556412 IGKCP01834 107 aa9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 CNBPP62633 177 aaKnown RBP9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 SYCNQ0VAF6 134 aa9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 C6orf226Q5I0X4 101 aa9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 GCSHP23434 173 aa9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 CARD19Q96LW7 228 aa9.12□□□□□ -0.95
VIPAS39-208ENST00000556412 C20orf202A1L168 122 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 CKS1BP61024 79 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 C2orf82Q6UX34 121 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 Q6ZRU5 148 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 COX7B2Q8TF08 81 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 C2orf48Q96LS8 159 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 C12orf57Q99622 126 aa9.11□□□□□ -0.95
VIPAS39-208ENST00000556412 NDUFA1O15239 70 aa9.1□□□□□ -0.95
VIPAS39-208ENST00000556412 SMIM6P0DI80 62 aa9.1□□□□□ -0.95
VIPAS39-208ENST00000556412 KIAA0087Q14695 138 aa9.1□□□□□ -0.95
VIPAS39-208ENST00000556412 LINC01545Q5VT33 79 aa9.1□□□□□ -0.95
VIPAS39-208ENST00000556412 Q8IZM0 81 aa9.1□□□□□ -0.95
VIPAS39-208ENST00000556412 TMEM223A0PJW6 202 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms