RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 FAIMQ9NVQ4 179 aa-0.61□□□□□ -2.51
SRP54-207ENST00000555535 CCDC167Q9P0B6 97 aa-0.61□□□□□ -2.51
SRP54-207ENST00000555535 LINC01558Q9Y6Z2 57 aa-0.61□□□□□ -2.51
SRP54-207ENST00000555535 CFTRP13569 1480 aa-0.61□□□□□ -2.51
SRP54-207ENST00000555535 SETD2Q9BYW2 2564 aaPredicted RBP-0.61□□□□□ -2.51
SRP54-207ENST00000555535 COL14A1Q05707 1796 aaKnown RBP-0.62□□□□□ -2.51
SRP54-207ENST00000555535 TRBV7-4A0A0J9YYF1 115 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 FAM25AB3EWG3 89 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 FAM25CB3EWG5 89 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 FAM25GB3EWG6 89 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 ARPC4P59998 168 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 DEFB123Q8N688 67 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 COPS9Q8WXC6 57 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 MARF1Q9Y4F3 1742 aaKnown RBP-0.62□□□□□ -2.51
SRP54-207ENST00000555535 SHANK2Q9UPX8 1470 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 NBASA2RRP1 2371 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 MYOM1P52179 1685 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 USH2AO75445 5202 aa-0.62□□□□□ -2.51
SRP54-207ENST00000555535 RYR3Q15413 4870 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 NSD3Q9BZ95 1437 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 LINC00959A0A1B0GUT2 108 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 CHKB-CPT1BH3BT56 60 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 MGPP08493 103 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 DR1Q01658 176 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 C10orf113Q5VZT2 155 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 C12orf73Q69YU5 71 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 SERP1Q9Y6X1 66 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 GRIN2AQ12879 1464 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 LAMA5O15230 3695 aa-0.63□□□□□ -2.51
SRP54-207ENST00000555535 CPSF1Q10570 1443 aaKnown RBP-0.64□□□□□ -2.51
SRP54-207ENST00000555535 SHROOM2Q13796 1616 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 HECTD1Q9ULT8 2610 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 COX8AP10176 69 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 CATR1Q13166 79 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 MRPL54Q6P161 138 aaKnown RBP-0.64□□□□□ -2.51
SRP54-207ENST00000555535 SFTA2Q6UW10 78 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 LCN9Q8WX39 176 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 LINC01600Q96MT4 127 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 XRN1Q8IZH2 1706 aaKnown RBP-0.64□□□□□ -2.51
SRP54-207ENST00000555535 UNC13AQ9UPW8 1703 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 TOP2BQ02880 1626 aa-0.64□□□□□ -2.51
SRP54-207ENST00000555535 USP9YO00507 2555 aaPredicted RBP-0.64□□□□□ -2.51
SRP54-207ENST00000555535 CPSF4LA6NMK7 179 aaKnown RBP-0.65□□□□□ -2.51
SRP54-207ENST00000555535 GNG7O60262 68 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 IGLC1P0CG04 106 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 SPRR2AP35326 72 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 MEIG1Q5JSS6 88 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 FAM223AQ8IWN6 122 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 TMEM263Q8WUH6 116 aaKnown RBP-0.65□□□□□ -2.51
SRP54-207ENST00000555535 RERGLQ9H628 205 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 CRIPTQ9P021 101 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 LINC00474Q9P2X8 69 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 ARL2-SNX15V9GYD0 113 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 TULP4Q9NRJ4 1543 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 RGPD2P0DJD1 1756 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 CUL7Q14999 1698 aa-0.65□□□□□ -2.51
SRP54-207ENST00000555535 SETBP1Q9Y6X0 1596 aa-0.66□□□□□ -2.51
SRP54-207ENST00000555535 MAGI1Q96QZ7 1491 aaPredicted RBP-0.66□□□□□ -2.51
SRP54-207ENST00000555535 HYDINQ4G0P3 5121 aa-0.66□□□□□ -2.51
SRP54-207ENST00000555535 LOC285095A0A1B0GVY8 99 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 IFNGP01579 166 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 MT4P47944 62 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 MYOZ3Q8TDC0 251 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 USMG5Q96IX5 58 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 NAA60Q9H7X0 242 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 NXT2Q9NPJ8 142 aaKnown RBP-0.66□□□□□ -2.52
SRP54-207ENST00000555535 TGP01266 2768 aa-0.66□□□□□ -2.52
SRP54-207ENST00000555535 NLRP1Q9C000 1473 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 SPTBN4Q9H254 2564 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 KIAA1109Q2LD37 5005 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 SPRR2EP22531 72 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 DEFB112Q30KQ8 113 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 ARL11Q969Q4 196 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 PPP3R2Q96LZ3 170 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 UQCR10Q9UDW1 63 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 KIF20BQ96Q89 1820 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 ZFHX3Q15911 3703 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 RYR1P21817 5038 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 A0A0G2JMZ2 1700 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 KNL1Q8NG31 2342 aa-0.67□□□□□ -2.52
SRP54-207ENST00000555535 SEC11AP67812 179 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 H1FX-AS1Q4G0G2 97 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 Q56UQ5 140 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 SPANXDQ9BXN6 97 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 MANBALQ9NQG1 85 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 STARD9Q9P2P6 4700 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 C1orf167Q5SNV9 1468 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 SPG11Q96JI7 2443 aa-0.68□□□□□ -2.52
SRP54-207ENST00000555535 KNDC1Q76NI1 1749 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 APOC2P02655 101 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 GNG11P61952 73 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 COMMD6Q7Z4G1 85 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 SNRNP25Q9BV90 132 aaKnown RBP-0.69□□□□□ -2.52
SRP54-207ENST00000555535 LINC00470Q9BZP3 86 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 PRO1933Q9H354 126 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 MXRA5Q9NR99 2828 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 UBR4Q5T4S7 5183 aa-0.69□□□□□ -2.52
SRP54-207ENST00000555535 LOC100130705A0A1B0GUX0 176 aa-0.7□□□□□ -2.52
SRP54-207ENST00000555535 LOC105371267A0A1B0GV96 52 aa-0.7□□□□□ -2.52
SRP54-207ENST00000555535 A0A1B0GWA3 101 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms