RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 DPM2O94777 84 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 IGKCP01834 107 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 BVES-AS1Q5T3Y7 98 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 UBE2WQ96B02 151 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 TM2D2Q9BX73 214 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 TRAV12-1A0A0B4J245 112 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 LRCOL1A6NCL2 159 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 PSCAO43653 123 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 FGF6P10767 208 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 KRTAP10-2P60368 255 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 ENHOQ6UWT2 76 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 KIR2DL4Q99706 377 aa9.46□□□□□ -0.9
SHMT2-217ENST00000555116 MRPL35Q9NZE8 188 aaKnown RBP9.46□□□□□ -0.9
SHMT2-217ENST00000555116 TSHBP01222 138 aa9.45□□□□□ -0.9
SHMT2-217ENST00000555116 ANGP03950 147 aaKnown RBP9.45□□□□□ -0.9
SHMT2-217ENST00000555116 ERASQ7Z444 233 aa9.45□□□□□ -0.9
SHMT2-217ENST00000555116 DYNC1H1Q14204 4646 aaKnown RBP9.45□□□□□ -0.9
SHMT2-217ENST00000555116 A0A1B0GUV1 79 aa9.45□□□□□ -0.9
SHMT2-217ENST00000555116 CYSLTR1Q9Y271 337 aa9.45□□□□□ -0.9
SHMT2-217ENST00000555116 LINC01549A6NIU2 74 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 TAX1BP3O14907 124 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 C2orf91Q6ZV80 131 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 BOD1L2Q8IYS8 172 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 MAPKAPK5-AS1Q8N8E1 139 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 C20orf203Q8NBC4 194 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 RMI2Q96E14 147 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 PRR34Q9NV39 138 aa9.44□□□□□ -0.9
SHMT2-217ENST00000555116 IGLV4-60A0A075B6I1 120 aa9.43□□□□□ -0.9
SHMT2-217ENST00000555116 UBE2L6O14933 153 aa9.43□□□□□ -0.9
SHMT2-217ENST00000555116 IGKV2D-24A0A075B6R9 120 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 CRPP02741 224 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 PLNP26678 52 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 SEC11AP67812 179 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 Q6ZVH6 145 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 LINC00269Q8N2A0 174 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 BAALCQ8WXS3 180 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-217ENST00000555116 IGKV2-29A2NJV5 120 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-217ENST00000555116 IGIPA6NJ69 53 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 C16orf90A8MZG2 172 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 F8VRH5 84 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 H7C423 109 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 NMUP48645 174 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 RPL39P62891 51 aaKnown RBP9.42□□□□□ -0.9
SHMT2-217ENST00000555116 WFDC2Q14508 124 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 ZC2HC1BQ5TFG8 222 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 PCP2Q8IVA1 136 aa9.42□□□□□ -0.9
SHMT2-217ENST00000555116 CHTOPQ9Y3Y2 248 aaKnown RBP9.42□□□□□ -0.9
SHMT2-217ENST00000555116 IGKV2D-26A0A0A0MRZ7 120 aa9.41□□□□□ -0.9
SHMT2-217ENST00000555116 MIAQ16674 131 aa9.41□□□□□ -0.9
SHMT2-217ENST00000555116 CLPSL2Q6UWE3 100 aa9.41□□□□□ -0.9
SHMT2-217ENST00000555116 FUSP35637 526 aaKnown RBP eCLIP9.4□□□□□ -0.9
SHMT2-217ENST00000555116 REG3AQ06141 175 aa9.4□□□□□ -0.91
SHMT2-217ENST00000555116 TMEM141Q96I45 108 aa9.4□□□□□ -0.91
SHMT2-217ENST00000555116 TIMM17AQ99595 171 aa9.4□□□□□ -0.91
SHMT2-217ENST00000555116 C1orf43Q9BWL3 253 aa9.4□□□□□ -0.91
SHMT2-217ENST00000555116 PGPEP1Q9NXJ5 209 aa9.4□□□□□ -0.91
SHMT2-217ENST00000555116 A6NDN8 102 aa9.39□□□□□ -0.91
SHMT2-217ENST00000555116 C21orf62-AS1Q17RA5 79 aa9.39□□□□□ -0.91
SHMT2-217ENST00000555116 KRTAP26-1Q6PEX3 210 aa9.39□□□□□ -0.91
SHMT2-217ENST00000555116 AMMECR1LQ6DCA0 310 aa9.38□□□□□ -0.91
SHMT2-217ENST00000555116 Q8N814 137 aa9.38□□□□□ -0.91
SHMT2-217ENST00000555116 LECT2O14960 151 aa9.38□□□□□ -0.91
SHMT2-217ENST00000555116 GTF2H5Q6ZYL4 71 aa9.38□□□□□ -0.91
SHMT2-217ENST00000555116 CST9LQ9H4G1 147 aa9.38□□□□□ -0.91
SHMT2-217ENST00000555116 DNAH5Q8TE73 4624 aa9.37□□□□□ -0.91
SHMT2-217ENST00000555116 PMVKQ15126 192 aa9.37□□□□□ -0.91
SHMT2-217ENST00000555116 H3BRM9 83 aa9.36□□□□□ -0.91
SHMT2-217ENST00000555116 K7ERU9 68 aa9.36□□□□□ -0.91
SHMT2-217ENST00000555116 TTTY13Q9BZ97 58 aa9.36□□□□□ -0.91
SHMT2-217ENST00000555116 RNF151Q2KHN1 245 aa9.36□□□□□ -0.91
SHMT2-217ENST00000555116 OCIAD2Q56VL3 154 aa9.36□□□□□ -0.91
SHMT2-217ENST00000555116 LRP1BQ9NZR2 4599 aa9.35□□□□□ -0.91
SHMT2-217ENST00000555116 IGLV10-54A0A075B6I4 117 aa9.35□□□□□ -0.91
SHMT2-217ENST00000555116 TRAV8-4A0A0B4J246 113 aa9.35□□□□□ -0.91
SHMT2-217ENST00000555116 GAGE10A6NGK3 116 aa9.35□□□□□ -0.91
SHMT2-217ENST00000555116 HSD52Q0P140 79 aa9.35□□□□□ -0.91
SHMT2-217ENST00000555116 NTN5Q8WTR8 489 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-217ENST00000555116 IGLV4-69A0A075B6H9 119 aa9.34□□□□□ -0.91
SHMT2-217ENST00000555116 VPS25Q9BRG1 176 aa9.34□□□□□ -0.91
SHMT2-217ENST00000555116 OR5A1Q8NGJ0 315 aa9.34□□□□□ -0.91
SHMT2-217ENST00000555116 TMEM101Q96IK0 257 aa9.34□□□□□ -0.91
SHMT2-217ENST00000555116 OPRPNQ99935 248 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-217ENST00000555116 HIGD1BQ9P298 99 aa9.34□□□□□ -0.91
SHMT2-217ENST00000555116 C9orf118A6NHY6 69 aa9.33□□□□□ -0.92
SHMT2-217ENST00000555116 C11orf86A6NJI1 115 aa9.33□□□□□ -0.92
SHMT2-217ENST00000555116 PAPPA-AS1Q5QFB9 102 aa9.33□□□□□ -0.92
SHMT2-217ENST00000555116 CDC42SE2Q9NRR3 84 aa9.33□□□□□ -0.92
SHMT2-217ENST00000555116 UBE2D4Q9Y2X8 147 aa9.33□□□□□ -0.92
SHMT2-217ENST00000555116 IGLV5-52A0A0A0MRZ9 124 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 IGKV3OR2-268A0A0C4DH90 116 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 KIAA1109Q2LD37 5005 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 USP17L23D6RBM5 183 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 E9PLD3 99 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 KRTAP10-1P60331 282 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 TIMM21Q9BVV7 248 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 PYGO1Q9Y3Y4 419 aa9.32□□□□□ -0.92
SHMT2-217ENST00000555116 CSDC2Q9Y534 153 aaKnown RBP9.32□□□□□ -0.92
SHMT2-217ENST00000555116 IGLV4-3A0A075B6K6 122 aa9.31□□□□□ -0.92
SHMT2-217ENST00000555116 GCSHP23434 173 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms