RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TRAV13-1A0A0B4J241 112 aa8.9□□□□□ -0.99
VIPAS39-206ENST00000553888 UBE2D1P51668 147 aa8.9□□□□□ -0.99
VIPAS39-206ENST00000553888 UBE2L6O14933 153 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 PAX4O43316 350 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 FXYD2P54710 66 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 HERVK_113P61574 105 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 PRO0255Q9UI72 69 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 TRBV6-8A0A0A6YYG3 113 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 IGKV3OR2-268A0A0C4DH90 116 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 C6orf226Q5I0X4 101 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 MGAM2Q2M2H8 2515 aa8.89□□□□□ -0.99
VIPAS39-206ENST00000553888 IGLV4-60A0A075B6I1 120 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 J3QQQ9 107 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 ATP6V0E2Q8NHE4 81 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 CHCHD5Q9BSY4 110 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 CDC42SE2Q9NRR3 84 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 HIGD1BQ9P298 99 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 CDKN2A-AS1Q9UH64 79 aa8.88□□□□□ -0.99
VIPAS39-206ENST00000553888 NHLRC4P0CG21 123 aaPredicted RBP8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 OR5A1Q8NGJ0 315 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 OR13C6PQ8NH95 151 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 MDFIQ99750 246 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 TIMM21Q9BVV7 248 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 SPART-AS1P0CW21 52 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 LINC00242Q5T6M2 205 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 SCGB1D4Q6XE38 83 aa8.87□□□□□ -0.99
VIPAS39-206ENST00000553888 K7ERJ3 54 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 IGHV3-30-3P0DP02 117 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 SAMD5Q5TGI4 173 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 Q8N3U1 123 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 ATP5G1P05496 136 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 LGALS3P17931 250 aaKnown RBP8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 RAB37Q96AX2 223 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 HIST1H4GQ99525 98 aa8.86□□□□□ -0.99
VIPAS39-206ENST00000553888 LEPROTO15243 131 aa8.85□□□□□ -0.99
VIPAS39-206ENST00000553888 HUWE1Q7Z6Z7 4374 aaKnown RBP8.85□□□□□ -0.99
VIPAS39-206ENST00000553888 CEND1Q8N111 149 aa8.85□□□□□ -0.99
VIPAS39-206ENST00000553888 C12orf74Q32Q52 190 aa8.84□□□□□ -0.99
VIPAS39-206ENST00000553888 TMEM101Q96IK0 257 aa8.84□□□□□ -0.99
VIPAS39-206ENST00000553888 MT-ATP8P03928 68 aa8.84□□□□□ -0.99
VIPAS39-206ENST00000553888 HRCT1Q6UXD1 115 aa8.84□□□□□ -0.99
VIPAS39-206ENST00000553888 TMEM262E9PQX1 116 aa8.83□□□□□ -1
VIPAS39-206ENST00000553888 SEC11AP67812 179 aa8.83□□□□□ -1
VIPAS39-206ENST00000553888 CLPSL2Q6UWE3 100 aa8.83□□□□□ -1
VIPAS39-206ENST00000553888 C10orf126Q8N4M7 172 aa8.83□□□□□ -1
VIPAS39-206ENST00000553888 NHP2Q9NX24 153 aaKnown RBP8.83□□□□□ -1
VIPAS39-206ENST00000553888 J3QR89 54 aa8.82□□□□□ -1
VIPAS39-206ENST00000553888 IGHV1-58A0A0C4DH39 117 aa8.82□□□□□ -1
VIPAS39-206ENST00000553888 A0A0J9YWU9 116 aa8.82□□□□□ -1
VIPAS39-206ENST00000553888 TRBV20-1A0A075B6N2 111 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 Q6ZTC4 211 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 C9JAW5 83 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 MEIG1Q5JSS6 88 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 TM2D2Q9BX73 214 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 IGLV5-45A0A087WSX0 123 aa8.81□□□□□ -1
VIPAS39-206ENST00000553888 SRSF9Q13242 221 aaKnown RBP eCLIP8.81□□□□□ -1
VIPAS39-206ENST00000553888 A6NDN8 102 aa8.8□□□□□ -1
VIPAS39-206ENST00000553888 K7EIL1 84 aa8.8□□□□□ -1
VIPAS39-206ENST00000553888 H7C423 109 aa8.79□□□□□ -1
VIPAS39-206ENST00000553888 NANOS2P60321 138 aaKnown RBP8.79□□□□□ -1
VIPAS39-206ENST00000553888 HERVK_113P63121 156 aa8.79□□□□□ -1
VIPAS39-206ENST00000553888 DEFB121Q5J5C9 76 aa8.79□□□□□ -1
VIPAS39-206ENST00000553888 SMIM1B2RUZ4 78 aa8.79□□□□□ -1
VIPAS39-206ENST00000553888 NDUFA12Q9UI09 145 aa8.79□□□□□ -1
VIPAS39-206ENST00000553888 A0A0J9YXY3 114 aa8.78□□□□□ -1
VIPAS39-206ENST00000553888 TMEM126AQ9H061 195 aa8.78□□□□□ -1
VIPAS39-206ENST00000553888 PRO0628Q9UI54 55 aa8.78□□□□□ -1
VIPAS39-206ENST00000553888 H3BUT2 72 aa8.78□□□□□ -1
VIPAS39-206ENST00000553888 ZNF625Q96I27 306 aaPredicted RBP8.78□□□□□ -1
VIPAS39-206ENST00000553888 COL7A1Q02388 2944 aa8.78□□□□□ -1
VIPAS39-206ENST00000553888 TAL2Q16559 108 aa8.77□□□□□ -1
VIPAS39-206ENST00000553888 FAM19A3Q7Z5A8 133 aa8.77□□□□□ -1
VIPAS39-206ENST00000553888 H3BRM9 83 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 J3KT08 172 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 FAM236DA0A1B0GTK5 79 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 K7EP34 96 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 SMIM13P0DJ93 91 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 FAM236CP0DP71 79 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 NPC2P61916 151 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 LINC00336Q6ZUF6 198 aa8.77□□□□□ -1.01
VIPAS39-206ENST00000553888 IGHV3-30P01768 117 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 IGHV3-30-5P0DP03 117 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 ADAMTSL4-AS1Q5T5F5 129 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 ICOSQ9Y6W8 199 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 OXTP01178 125 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 ZFAND6Q6FIF0 208 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 C5orf38Q86SI9 138 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 DAND5Q8N907 189 aa8.76□□□□□ -1.01
VIPAS39-206ENST00000553888 IGLV5-39A0A0G2JS06 123 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 LINC00959A0A1B0GUT2 108 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 MALP21145 153 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 LITAFQ99732 161 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 C9orf118A6NHY6 69 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 XCL1P47992 114 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 XGP55808 180 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 LINC00269Q8N2A0 174 aa8.75□□□□□ -1.01
VIPAS39-206ENST00000553888 C11orf68Q9H3H3 251 aaKnown RBP8.74□□□□□ -1.01
VIPAS39-206ENST00000553888 IGLV10-54A0A075B6I4 117 aa8.74□□□□□ -1.01
VIPAS39-206ENST00000553888 APOMO95445 188 aa8.74□□□□□ -1.01
VIPAS39-206ENST00000553888 KPRPQ5T749 579 aaPredicted RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms