RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 MRPL52Q86TS9 123 aaKnown RBP4.32□□□□□ -1.72
ATXN3-219ENST00000553488 C9orf62Q8N4C0 152 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 KCNRGQ8N5I3 272 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 FAM213BQ8TBF2 198 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 SMIM12Q96EX1 92 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 CAMK2N2Q96S95 79 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 CDC42SE2Q9NRR3 84 aa4.32□□□□□ -1.72
ATXN3-219ENST00000553488 TRBV6-5A0A0K0K1A5 114 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 FAM168BA1KXE4 195 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 XKRY2A2RUG3 117 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 BCL2L11O43521 198 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 IFNA1P01562 189 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 TAGLN2P37802 199 aaKnown RBP4.31□□□□□ -1.72
ATXN3-219ENST00000553488 RPL13AP40429 203 aaKnown RBP4.31□□□□□ -1.72
ATXN3-219ENST00000553488 FOXA3P55318 350 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-219ENST00000553488 EIF5AP63241 154 aaKnown RBP4.31□□□□□ -1.72
ATXN3-219ENST00000553488 SS18Q15532 418 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 EIF5AL1Q6IS14 154 aaKnown RBP4.31□□□□□ -1.72
ATXN3-219ENST00000553488 Q75L30 129 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 KRTAP7-1Q8IUC3 87 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 TMEM101Q96IK0 257 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 BTF3L4Q96K17 158 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 C2orf48Q96LS8 159 aa4.31□□□□□ -1.72
ATXN3-219ENST00000553488 RAB19A4D1S5 217 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 UMAD1C9J7I0 102 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 I3L3M4 83 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 COX7A2LO14548 114 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 ARPC5O15511 151 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 CCL20P78556 96 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 OPRPNQ99935 248 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-219ENST00000553488 RNASE7Q9H1E1 156 aaKnown RBP4.3□□□□□ -1.72
ATXN3-219ENST00000553488 TMEM242Q9NWH2 141 aa4.3□□□□□ -1.72
ATXN3-219ENST00000553488 A0A087WZ39 114 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 TRAV1-1A0A0B4J248 108 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 A0A0U1RRA0 63 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 LINC00862A6NCI5 91 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 GNG4P50150 75 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 UBE2D1P51668 147 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 SPAG11BQ08648 103 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 MRAP2Q96G30 205 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 MANBALQ9NQG1 85 aa4.29□□□□□ -1.72
ATXN3-219ENST00000553488 CARHSP1Q9Y2V2 147 aaKnown RBP4.29□□□□□ -1.72
ATXN3-219ENST00000553488 TRBV27A0A0K0K1C4 114 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 C7orf77A4D0Y5 90 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 C1orf196B1AJZ1 125 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 TLX1NBP0CAT3 122 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 PMCHP20382 165 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 POLR2KP53803 58 aaKnown RBP4.28□□□□□ -1.72
ATXN3-219ENST00000553488 ZNF345Q14585 488 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 TEX261Q6UWH6 196 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 FAM19A5Q7Z5A7 132 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-219ENST00000553488 TSKUQ8WUA8 353 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 RPP21Q9H633 154 aaKnown RBP4.28□□□□□ -1.72
ATXN3-219ENST00000553488 MRPL35Q9NZE8 188 aaKnown RBP4.28□□□□□ -1.72
ATXN3-219ENST00000553488 GNG13Q9P2W3 67 aa4.28□□□□□ -1.72
ATXN3-219ENST00000553488 LOC105371267A0A1B0GV96 52 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 K7EN84 100 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 RNASE13Q5GAN3 156 aaKnown RBP4.27□□□□□ -1.73
ATXN3-219ENST00000553488 C5orf38Q86SI9 138 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 SLC51BQ86UW2 128 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 OR10D4PQ8NGN7 298 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 UBE2D4Q9Y2X8 147 aa4.27□□□□□ -1.73
ATXN3-219ENST00000553488 CSDC2Q9Y534 153 aaKnown RBP4.27□□□□□ -1.73
ATXN3-219ENST00000553488 A0A087X002 238 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 TRAV13-1A0A0B4J241 112 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 SMLR1H3BR10 107 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 M0QXV9 152 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 TSPAN13O95857 204 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 RAB14P61106 215 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 CLLU1Q5K131 121 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 Q6ZUT4 128 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 SMDT1Q9H4I9 107 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 ST20Q9HBF5 79 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 BIN3Q9NQY0 253 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 C6orf48Q9UBA6 75 aa4.26□□□□□ -1.73
ATXN3-219ENST00000553488 NDUFA1O15239 70 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 PDE6DO43924 150 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 SEC61BP60468 96 aaKnown RBP4.25□□□□□ -1.73
ATXN3-219ENST00000553488 SMIM15Q7Z3B0 74 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 ORAOV1Q8WV07 137 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 FAM104AQ969W3 186 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 IMMP2LQ96T52 175 aa4.25□□□□□ -1.73
ATXN3-219ENST00000553488 IGHV3OR16-9A0A0B4J2B5 98 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 ZNF861PO60384 105 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 KRTAP10-6P60371 365 aaPredicted RBP4.24□□□□□ -1.73
ATXN3-219ENST00000553488 UBE2BP63146 152 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 C9orf129Q5T035 196 aaKnown RBP4.24□□□□□ -1.73
ATXN3-219ENST00000553488 UNQ6190/PRO20217Q6UXQ8 127 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 COMMD7Q86VX2 200 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 MED9Q9NWA0 146 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 CRCT1Q9UGL9 99 aa4.24□□□□□ -1.73
ATXN3-219ENST00000553488 KIAA0087Q14695 138 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 TPRXLQ17RH7 258 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 PAPPA-AS1Q5QFB9 102 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 RETNLBQ9BQ08 111 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 TIMM21Q9BVV7 248 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 TMEM191AQ9H0A3 160 aa4.23□□□□□ -1.73
ATXN3-219ENST00000553488 KANTRA0A1W2PQU2 76 aa4.22□□□□□ -1.73
ATXN3-219ENST00000553488 HMSDA8MTL9 139 aa4.22□□□□□ -1.73
ATXN3-219ENST00000553488 SMKR1H3BMG3 65 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms