RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ANK2Q01484 3957 aa0.42□□□□□ -2.34
SCFD1-209ENST00000553280 FAM223BA6NKX1 122 aa0.42□□□□□ -2.34
SCFD1-209ENST00000553280 SAA2P0DJI9 122 aaPredicted RBP0.42□□□□□ -2.34
SCFD1-209ENST00000553280 ARHGEF12Q9NZN5 1544 aa0.42□□□□□ -2.34
SCFD1-209ENST00000553280 ABCA3Q99758 1704 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 FAT4Q6V0I7 4981 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 S100A10P60903 97 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 UBA52P62987 128 aaKnown RBP0.41□□□□□ -2.34
SCFD1-209ENST00000553280 C10orf113Q5VZT2 155 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 ACBD7Q8N6N7 88 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 NHSL1Q5SYE7 1610 aa0.41□□□□□ -2.34
SCFD1-209ENST00000553280 MAGI1Q96QZ7 1491 aaPredicted RBP0.41□□□□□ -2.34
SCFD1-209ENST00000553280 CACNA1CQ13936 2221 aa0.4□□□□□ -2.35
SCFD1-209ENST00000553280 GNGT2O14610 69 aa0.4□□□□□ -2.35
SCFD1-209ENST00000553280 PRDM15P57071 1507 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-209ENST00000553280 BTAF1O14981 1849 aa0.39□□□□□ -2.35
SCFD1-209ENST00000553280 MDN1Q9NU22 5596 aa0.39□□□□□ -2.35
SCFD1-209ENST00000553280 A0A1B0GWA3 101 aa0.39□□□□□ -2.35
SCFD1-209ENST00000553280 IGF2RP11717 2491 aa0.39□□□□□ -2.35
SCFD1-209ENST00000553280 PAPPAQ13219 1627 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 SYNE1Q8NF91 8797 aaKnown RBP0.38□□□□□ -2.35
SCFD1-209ENST00000553280 C2CD3Q4AC94 2353 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 COL4A6Q14031 1691 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 GAPVD1Q14C86 1478 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 TRBV6-1A0A0K0K1D8 114 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 NDUFC1O43677 76 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 MT-ATP8P03928 68 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 WFDC2Q14508 124 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 U3KQA8 63 aa0.38□□□□□ -2.35
SCFD1-209ENST00000553280 CHD9Q3L8U1 2897 aa0.37□□□□□ -2.35
SCFD1-209ENST00000553280 PIGYQ3MUY2 71 aa0.37□□□□□ -2.35
SCFD1-209ENST00000553280 PRO1933Q9H354 126 aa0.37□□□□□ -2.35
SCFD1-209ENST00000553280 AHCTF1Q8WYP5 2266 aa0.37□□□□□ -2.35
SCFD1-209ENST00000553280 TEX14Q8IWB6 1497 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 FYCO1Q9BQS8 1478 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 CFDP00746 253 aaPredicted RBP0.36□□□□□ -2.35
SCFD1-209ENST00000553280 LINC01600Q96MT4 127 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 AP4S1Q9Y587 144 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 TULP4Q9NRJ4 1543 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 VPS8Q8N3P4 1428 aa0.36□□□□□ -2.35
SCFD1-209ENST00000553280 POLA1P09884 1462 aaPredicted RBP0.35□□□□□ -2.35
SCFD1-209ENST00000553280 C1orf167Q5SNV9 1468 aa0.35□□□□□ -2.35
SCFD1-209ENST00000553280 ANKRD36BQ8N2N9 1353 aa0.35□□□□□ -2.35
SCFD1-209ENST00000553280 LINC00846Q9NV44 126 aa0.35□□□□□ -2.35
SCFD1-209ENST00000553280 MLH3Q9UHC1 1453 aa0.35□□□□□ -2.35
SCFD1-209ENST00000553280 LRP1Q07954 4544 aaKnown RBP0.34□□□□□ -2.35
SCFD1-209ENST00000553280 MPC2O95563 127 aa0.34□□□□□ -2.36
SCFD1-209ENST00000553280 Q5VSD8 79 aa0.34□□□□□ -2.36
SCFD1-209ENST00000553280 PMCHL2Q9BQD1 86 aa0.34□□□□□ -2.36
SCFD1-209ENST00000553280 CACFD1Q9UGQ2 172 aa0.34□□□□□ -2.36
SCFD1-209ENST00000553280 KMT2DO14686 5537 aa0.34□□□□□ -2.36
SCFD1-209ENST00000553280 NCOR2Q9Y618 2525 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 NUP188Q5SRE5 1749 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 MAST4O15021 2626 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 UNC79Q9P2D8 2635 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 A0A0G2JND7 137 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 NCMAPQ5T1S8 102 aa0.33□□□□□ -2.36
SCFD1-209ENST00000553280 FXYD6-FXYD2A0A087WZ82 144 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 LINC00032P0C843 101 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 DEFB123Q8N688 67 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 FDCSPQ8NFU4 85 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 LCN9Q8WX39 176 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 OTOGQ6ZRI0 2925 aa0.32□□□□□ -2.36
SCFD1-209ENST00000553280 ZNF292O60281 2723 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 TRBV7-4A0A0J9YYF1 115 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 H7BZZ5 65 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 M0R143 59 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 ATOX1O00244 68 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 DPY30Q9C005 99 aa0.31□□□□□ -2.36
SCFD1-209ENST00000553280 PPRC1Q5VV67 1664 aaKnown RBP0.3□□□□□ -2.36
SCFD1-209ENST00000553280 TRBV25-1A0A075B6N4 114 aa0.3□□□□□ -2.36
SCFD1-209ENST00000553280 LINC00959A0A1B0GUT2 108 aa0.3□□□□□ -2.36
SCFD1-209ENST00000553280 MYO7BQ6PIF6 2116 aa0.3□□□□□ -2.36
SCFD1-209ENST00000553280 ZFHX3Q15911 3703 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 ABCC10Q5T3U5 1492 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 PLCE1Q9P212 2302 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 A0A087WVE0 104 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 S100A8P05109 93 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 PMCHL1Q16048 86 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 DEFB109BQ30KR1 87 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 VAMP8Q9BV40 100 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 HIVEP3Q5T1R4 2406 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 XRN1Q8IZH2 1706 aaKnown RBP0.29□□□□□ -2.36
SCFD1-209ENST00000553280 NLRP1Q9C000 1473 aa0.29□□□□□ -2.36
SCFD1-209ENST00000553280 PSMG4Q5JS54 123 aa0.28□□□□□ -2.36
SCFD1-209ENST00000553280 SERP2Q8N6R1 65 aa0.28□□□□□ -2.36
SCFD1-209ENST00000553280 IGSF10Q6WRI0 2623 aa0.28□□□□□ -2.37
SCFD1-209ENST00000553280 AKAP6Q13023 2319 aa0.27□□□□□ -2.37
SCFD1-209ENST00000553280 C7orf77A4D0Y5 90 aa0.27□□□□□ -2.37
SCFD1-209ENST00000553280 SPRR1AP35321 89 aa0.27□□□□□ -2.37
SCFD1-209ENST00000553280 TRGV9Q99603 122 aa0.27□□□□□ -2.37
SCFD1-209ENST00000553280 PLEKHH2Q8IVE3 1493 aa0.27□□□□□ -2.37
SCFD1-209ENST00000553280 UQCRHP07919 91 aa0.26□□□□□ -2.37
SCFD1-209ENST00000553280 ASIPP42127 132 aa0.26□□□□□ -2.37
SCFD1-209ENST00000553280 COX6B1P14854 86 aa0.25□□□□□ -2.37
SCFD1-209ENST00000553280 GOLGA4Q13439 2230 aaKnown RBP0.25□□□□□ -2.37
SCFD1-209ENST00000553280 A0A0G2JMZ2 1700 aa0.24□□□□□ -2.37
SCFD1-209ENST00000553280 HRNRQ86YZ3 2850 aaPredicted RBP0.24□□□□□ -2.37
SCFD1-209ENST00000553280 SETBP1Q9Y6X0 1596 aa0.24□□□□□ -2.37
SCFD1-209ENST00000553280 RAPGEF2Q9Y4G8 1499 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms