RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 IGHV3-64DA0A0J9YX35 117 aa6.74□□□□□ -1.33
PTCH1-220ENST00000550136 A0A1W2PPZ6 126 aa6.74□□□□□ -1.33
PTCH1-220ENST00000550136 ZNF503-AS2A6NEH8 195 aa6.74□□□□□ -1.33
PTCH1-220ENST00000550136 UBE2L6O14933 153 aa6.74□□□□□ -1.33
PTCH1-220ENST00000550136 C15orf32Q32M92 178 aa6.74□□□□□ -1.33
PTCH1-220ENST00000550136 IGLV3-12A0A075B6K2 115 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 CD28P10747 220 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 XP32Q5T750 250 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 Q6ZRP5 223 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 HRNRQ86YZ3 2850 aaPredicted RBP6.73□□□□□ -1.33
PTCH1-220ENST00000550136 BUB1B-PAK6H3BSN5 160 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 ECSCRQ19T08 205 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 PIK3CD-AS1Q5SR53 167 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 C11orf21Q9P2W6 132 aa6.73□□□□□ -1.33
PTCH1-220ENST00000550136 ERC2-IT1O76042 136 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 CGB3P0DN86 165 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 CGB7P0DN87 165 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 Q6ZTC4 211 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 GPHB5Q86YW7 130 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 TLN2Q9Y4G6 2542 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 C17orf58Q2M2W7 97 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 HCP5Q6MZN7 132 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 ZNF833PQ6ZTB9 187 aa6.72□□□□□ -1.33
PTCH1-220ENST00000550136 ZNF625Q96I27 306 aaPredicted RBP6.72□□□□□ -1.33
PTCH1-220ENST00000550136 PRR14LQ5THK1 2151 aa6.71□□□□□ -1.33
PTCH1-220ENST00000550136 IGHV3-21A0A0B4J1V1 117 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 TRAV10A0A0B4J240 114 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 IGHV3-9P01782 118 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 FUSP35637 526 aaKnown RBP eCLIP6.71□□□□□ -1.34
PTCH1-220ENST00000550136 OPRPNQ99935 248 aaPredicted RBP6.71□□□□□ -1.34
PTCH1-220ENST00000550136 IGHV1-18A0A0C4DH31 117 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 hDV103S1A0JD37 113 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 CTSGP08311 255 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 CCL13Q99616 98 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 UBL5Q9BZL1 73 aa6.71□□□□□ -1.34
PTCH1-220ENST00000550136 A0A0J9YXV3 536 aa6.7□□□□□ -1.34
PTCH1-220ENST00000550136 IGKV1-17P01599 117 aa6.7□□□□□ -1.34
PTCH1-220ENST00000550136 SPINK14Q6IE38 97 aa6.7□□□□□ -1.34
PTCH1-220ENST00000550136 TMEM254Q8TBM7 123 aa6.7□□□□□ -1.34
PTCH1-220ENST00000550136 LINC00308Q8TCZ7 52 aa6.7□□□□□ -1.34
PTCH1-220ENST00000550136 VCYO14598 125 aa6.69□□□□□ -1.34
PTCH1-220ENST00000550136 POLR2KP53803 58 aaKnown RBP6.69□□□□□ -1.34
PTCH1-220ENST00000550136 Q8N6K4 173 aa6.69□□□□□ -1.34
PTCH1-220ENST00000550136 F6UB75 175 aa6.69□□□□□ -1.34
PTCH1-220ENST00000550136 MGPP08493 103 aa6.69□□□□□ -1.34
PTCH1-220ENST00000550136 SYCNQ0VAF6 134 aa6.69□□□□□ -1.34
PTCH1-220ENST00000550136 IGHV4OR15-8A0A075B7B6 117 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 A0A087WW49 117 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 NCR3O14931 201 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 CLEC19AQ6UXS0 136 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 LCA10Q71F78 164 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 GGNQ86UU5 652 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 TRAV22A0A0B4J277 110 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 PRYO14603 147 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 PSPHP1O15172 72 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 MRPL33O75394 65 aaKnown RBP6.68□□□□□ -1.34
PTCH1-220ENST00000550136 TMEM30BQ3MIR4 351 aa6.68□□□□□ -1.34
PTCH1-220ENST00000550136 SONP18583 2426 aaKnown RBP6.68□□□□□ -1.34
PTCH1-220ENST00000550136 ANK2Q01484 3957 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 IGLV2-23P01705 113 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 FBXL19-AS1Q494R0 122 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 ZANQ9Y493 2812 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 I3L2K1 104 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 KRTAP1-1Q07627 177 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 FAM215AQ9Y5M1 114 aa6.67□□□□□ -1.34
PTCH1-220ENST00000550136 A6NN06 94 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 A8MUN3 132 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 B3GALT5-AS1P59052 145 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 ARFGEF3Q5TH69 2177 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 MIR7-3HGQ8N6C7 128 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 VPS13CQ709C8 3753 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 ANK3Q12955 4377 aaKnown RBP6.66□□□□□ -1.34
PTCH1-220ENST00000550136 NDUFA1O15239 70 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 TNP2Q05952 138 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 C9orf47Q6ZRZ4 202 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 C7orf65Q6ZTY9 151 aa6.66□□□□□ -1.34
PTCH1-220ENST00000550136 A0A087WYN8 130 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 JMJD7-PLA2G4BH0Y9G9 81 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 NREPQ16612 68 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 MRGPRG-AS1Q2M3A8 158 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 KRTAP24-1Q3LI83 254 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 ATP11AUNQ6ZP68 121 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 DIRC1Q969H9 104 aa6.65□□□□□ -1.34
PTCH1-220ENST00000550136 IGKV3D-15A0A087WSY6 115 aa6.65□□□□□ -1.35
PTCH1-220ENST00000550136 RPL27AP46776 148 aaKnown RBP6.65□□□□□ -1.35
PTCH1-220ENST00000550136 UBE2AP49459 152 aa6.65□□□□□ -1.35
PTCH1-220ENST00000550136 SERTAD4-AS1Q5TG53 156 aa6.65□□□□□ -1.35
PTCH1-220ENST00000550136 LINC00269Q8N2A0 174 aa6.65□□□□□ -1.35
PTCH1-220ENST00000550136 IGLV4-3A0A075B6K6 122 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 A8MU10 97 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 H0YGX0 51 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 Q8N3U1 123 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 LINC00574Q9H8X3 128 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 ORMDL1Q9P0S3 153 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 MALRD1Q5VYJ5 2156 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 A0A087WWL8 130 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 MED14OSP0DP75 135 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 C11orf72Q8NBR9 251 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 LINC01560Q8TB33 94 aa6.64□□□□□ -1.35
PTCH1-220ENST00000550136 TRAV21A0A0B4J279 112 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms