RNA–Protein interactions for RNA: ENST00000549347.1

RAPGEF3-220, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 4

Gene RAPGEF3, Length 573 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-220ENST00000549347 HIGD2BQ4VC39 106 aa11.47□□□□□ -0.57
RAPGEF3-220ENST00000549347 LINC00242Q5T6M2 205 aa11.47□□□□□ -0.57
RAPGEF3-220ENST00000549347 HBDP02042 147 aa11.46□□□□□ -0.57
RAPGEF3-220ENST00000549347 LINC01620Q4KN68 170 aa11.46□□□□□ -0.57
RAPGEF3-220ENST00000549347 ZC2HC1BQ5TFG8 222 aa11.46□□□□□ -0.57
RAPGEF3-220ENST00000549347 FAM19A3Q7Z5A8 133 aa11.46□□□□□ -0.57
RAPGEF3-220ENST00000549347 C9orf163Q8N9P6 203 aa11.46□□□□□ -0.57
RAPGEF3-220ENST00000549347 HSPG2P98160 4391 aa11.46□□□□□ -0.58
RAPGEF3-220ENST00000549347 DNAH8Q96JB1 4490 aa11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 SLPIP03973 132 aa11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 MALP21145 153 aa11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 Q6ZSA8 131 aa11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 C5orf38Q86SI9 138 aa11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 CHCHD1Q96BP2 118 aaKnown RBP11.45□□□□□ -0.58
RAPGEF3-220ENST00000549347 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.43□□□□□ -0.58
RAPGEF3-220ENST00000549347 APOMO95445 188 aa11.43□□□□□ -0.58
RAPGEF3-220ENST00000549347 PMCHL1Q16048 86 aa11.43□□□□□ -0.58
RAPGEF3-220ENST00000549347 XGP55808 180 aa11.42□□□□□ -0.58
RAPGEF3-220ENST00000549347 COX6A2Q02221 97 aa11.42□□□□□ -0.58
RAPGEF3-220ENST00000549347 PDZD11Q5EBL8 140 aa11.42□□□□□ -0.58
RAPGEF3-220ENST00000549347 A0A087WZ39 114 aa11.41□□□□□ -0.58
RAPGEF3-220ENST00000549347 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.41□□□□□ -0.58
RAPGEF3-220ENST00000549347 SEC11AP67812 179 aa11.41□□□□□ -0.58
RAPGEF3-220ENST00000549347 OR10D4PQ8NGN7 298 aa11.41□□□□□ -0.58
RAPGEF3-220ENST00000549347 FAM30AQ9NZY2 134 aa11.41□□□□□ -0.58
RAPGEF3-220ENST00000549347 IGHV3-64A0A075B6Q5 118 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 ZNF561-AS1K7EIQ3 104 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 ATP6V1G1O75348 118 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 S100A1P23297 94 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 PMVKQ15126 192 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 BAGE3Q86Y29 109 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 LINC01561Q8N1V8 128 aa11.4□□□□□ -0.58
RAPGEF3-220ENST00000549347 ATP5LO75964 103 aa11.39□□□□□ -0.59
RAPGEF3-220ENST00000549347 HERVK_113P63121 156 aa11.39□□□□□ -0.59
RAPGEF3-220ENST00000549347 SPAG11BQ08648 103 aa11.39□□□□□ -0.59
RAPGEF3-220ENST00000549347 LINC00526Q96FQ7 95 aa11.39□□□□□ -0.59
RAPGEF3-220ENST00000549347 CST9LQ9H4G1 147 aa11.39□□□□□ -0.59
RAPGEF3-220ENST00000549347 IGLV4-69A0A075B6H9 119 aa11.38□□□□□ -0.59
RAPGEF3-220ENST00000549347 LINC00310P59036 64 aa11.38□□□□□ -0.59
RAPGEF3-220ENST00000549347 SDIM1Q6ZPB5 146 aa11.38□□□□□ -0.59
RAPGEF3-220ENST00000549347 ORAOV1Q8WV07 137 aa11.38□□□□□ -0.59
RAPGEF3-220ENST00000549347 A0A0J9YXV3 536 aa11.37□□□□□ -0.59
RAPGEF3-220ENST00000549347 HSBP1O75506 76 aa11.37□□□□□ -0.59
RAPGEF3-220ENST00000549347 C2orf48Q96LS8 159 aa11.37□□□□□ -0.59
RAPGEF3-220ENST00000549347 CARD19Q96LW7 228 aa11.37□□□□□ -0.59
RAPGEF3-220ENST00000549347 TINCRA0A1B0GVN0 87 aa11.36□□□□□ -0.59
RAPGEF3-220ENST00000549347 SERF1AO75920 110 aa11.36□□□□□ -0.59
RAPGEF3-220ENST00000549347 SYCNQ0VAF6 134 aa11.36□□□□□ -0.59
RAPGEF3-220ENST00000549347 GEMIN7Q9H840 131 aaKnown RBP11.36□□□□□ -0.59
RAPGEF3-220ENST00000549347 IGLV5-45A0A087WSX0 123 aa11.35□□□□□ -0.59
RAPGEF3-220ENST00000549347 F8WDY8 70 aa11.35□□□□□ -0.59
RAPGEF3-220ENST00000549347 HAMPP81172 84 aa11.35□□□□□ -0.59
RAPGEF3-220ENST00000549347 CDKN2A-AS1Q9UH64 79 aa11.35□□□□□ -0.59
RAPGEF3-220ENST00000549347 CAMK2N2Q96S95 79 aa11.34□□□□□ -0.59
RAPGEF3-220ENST00000549347 CIRBPQ14011 172 aaKnown RBP11.33□□□□□ -0.6
RAPGEF3-220ENST00000549347 Q6ZRU5 148 aa11.33□□□□□ -0.6
RAPGEF3-220ENST00000549347 SCXQ7RTU7 201 aa11.33□□□□□ -0.6
RAPGEF3-220ENST00000549347 FAM19A2Q8N3H0 131 aa11.33□□□□□ -0.6
RAPGEF3-220ENST00000549347 CHAC1Q9BUX1 264 aa11.33□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BKO60814 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BJP06899 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 IGLC3P0DOY3 106 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BOP23527 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BBP33778 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BDP58876 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BCP62807 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 KIAA0087Q14695 138 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST2H2BEQ16778 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 LINC00469Q8N7U9 141 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BHQ93079 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 IFI27L1Q96BM0 104 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BNQ99877 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 HIST1H2BMQ99879 126 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 PKIGQ9Y2B9 76 aa11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.32□□□□□ -0.6
RAPGEF3-220ENST00000549347 NDUFA6P56556 154 aa11.31□□□□□ -0.6
RAPGEF3-220ENST00000549347 Q8N1X5 172 aa11.31□□□□□ -0.6
RAPGEF3-220ENST00000549347 PACRGQ96M98 296 aaPredicted RBP11.31□□□□□ -0.6
RAPGEF3-220ENST00000549347 KRTAP17-1Q9BYP8 105 aa11.31□□□□□ -0.6
RAPGEF3-220ENST00000549347 SMIM1B2RUZ4 78 aa11.3□□□□□ -0.6
RAPGEF3-220ENST00000549347 PANO1I0J062 215 aa11.3□□□□□ -0.6
RAPGEF3-220ENST00000549347 NDUFA1O15239 70 aa11.3□□□□□ -0.6
RAPGEF3-220ENST00000549347 NUPR1O60356 82 aa11.3□□□□□ -0.6
RAPGEF3-220ENST00000549347 MRPL35Q9NZE8 188 aaKnown RBP11.3□□□□□ -0.6
RAPGEF3-220ENST00000549347 TRAV12-1A0A0B4J245 112 aa11.29□□□□□ -0.6
RAPGEF3-220ENST00000549347 RNF151Q2KHN1 245 aa11.29□□□□□ -0.6
RAPGEF3-220ENST00000549347 Q8IZM0 81 aa11.29□□□□□ -0.6
RAPGEF3-220ENST00000549347 CIRBP-AS1Q8TBR5 109 aa11.29□□□□□ -0.6
RAPGEF3-220ENST00000549347 SPACA4Q8TDM5 124 aa11.29□□□□□ -0.6
RAPGEF3-220ENST00000549347 LEPROTL1O95214 131 aa11.28□□□□□ -0.6
RAPGEF3-220ENST00000549347 CHTF8P0CG12 524 aa11.28□□□□□ -0.6
RAPGEF3-220ENST00000549347 A0A096LNI7 61 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 LOC107984640A0A0U1RRK4 108 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 H3BRM9 83 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 PRSS2P07478 247 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 ZNF22P17026 224 aaPredicted RBP11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 C10orf25Q5T742 122 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 UNQ6190/PRO20217Q6UXQ8 127 aa11.26□□□□□ -0.61
RAPGEF3-220ENST00000549347 TOMM7Q9P0U1 55 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms