RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SMIM2Q9BVW6 85 aa9.38□□□□□ -0.91
CLSTN3-216ENST00000545663 PRR34Q9NV39 138 aa9.38□□□□□ -0.91
CLSTN3-216ENST00000545663 NPYP01303 97 aa9.37□□□□□ -0.91
CLSTN3-216ENST00000545663 RAB5AP20339 215 aa9.37□□□□□ -0.91
CLSTN3-216ENST00000545663 NXT2Q9NPJ8 142 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-216ENST00000545663 NTM-AS1Q6ZSK4 140 aa9.35□□□□□ -0.91
CLSTN3-216ENST00000545663 MUC17Q685J3 4493 aa9.35□□□□□ -0.91
CLSTN3-216ENST00000545663 A0A096LNI7 61 aa9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 A0A1B0GUV1 79 aa9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 LINC01549A6NIU2 74 aa9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 ZNF25P17030 456 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 Q8N8P6 123 aa9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 ALKBH7Q9BT30 221 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-216ENST00000545663 TSHBP01222 138 aa9.33□□□□□ -0.92
CLSTN3-216ENST00000545663 RAB5BP61020 215 aa9.33□□□□□ -0.92
CLSTN3-216ENST00000545663 KIAA1644Q3SXP7 199 aa9.33□□□□□ -0.92
CLSTN3-216ENST00000545663 ORMDL2Q53FV1 153 aa9.33□□□□□ -0.92
CLSTN3-216ENST00000545663 AMMECR1LQ6DCA0 310 aa9.33□□□□□ -0.92
CLSTN3-216ENST00000545663 COLCA2A8K830 154 aa9.32□□□□□ -0.92
CLSTN3-216ENST00000545663 ESDP10768 282 aa9.32□□□□□ -0.92
CLSTN3-216ENST00000545663 RBX1P62877 108 aa9.32□□□□□ -0.92
CLSTN3-216ENST00000545663 LOC389332A0A1B0GUA5 103 aa9.31□□□□□ -0.92
CLSTN3-216ENST00000545663 TMEM101Q96IK0 257 aa9.31□□□□□ -0.92
CLSTN3-216ENST00000545663 GAGE6Q13070 117 aa9.3□□□□□ -0.92
CLSTN3-216ENST00000545663 MRPL52Q86TS9 123 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-216ENST00000545663 TIMM21Q9BVV7 248 aa9.3□□□□□ -0.92
CLSTN3-216ENST00000545663 CSDC2Q9Y534 153 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-216ENST00000545663 FA2HQ7L5A8 372 aa9.29□□□□□ -0.92
CLSTN3-216ENST00000545663 C15orf56Q8N910 161 aa9.29□□□□□ -0.92
CLSTN3-216ENST00000545663 C20orf203Q8NBC4 194 aa9.29□□□□□ -0.92
CLSTN3-216ENST00000545663 FGF6P10767 208 aa9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 IFI27P40305 119 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 REG3AQ06141 175 aa9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 RNASEKQ6P5S7 137 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 OR5A1Q8NGJ0 315 aa9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 SPANXA1Q9NS26 97 aa9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 CYSLTR1Q9Y271 337 aa9.28□□□□□ -0.92
CLSTN3-216ENST00000545663 LINC01546A6NGU7 62 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 SCO1O75880 301 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 TRGC2P03986 189 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 NPSP0C0P6 89 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 HIGD2BQ4VC39 106 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 C18orf32Q8TCD1 76 aa9.27□□□□□ -0.93
CLSTN3-216ENST00000545663 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.26□□□□□ -0.93
CLSTN3-216ENST00000545663 IGKV2-29A2NJV5 120 aaPredicted RBP9.26□□□□□ -0.93
CLSTN3-216ENST00000545663 KRTAP9-7A8MTY7 169 aa9.26□□□□□ -0.93
CLSTN3-216ENST00000545663 PAPPA-AS1Q5QFB9 102 aa9.26□□□□□ -0.93
CLSTN3-216ENST00000545663 PYGO1Q9Y3Y4 419 aa9.26□□□□□ -0.93
CLSTN3-216ENST00000545663 TRAV8-4A0A0B4J246 113 aa9.25□□□□□ -0.93
CLSTN3-216ENST00000545663 CCL25O15444 150 aa9.25□□□□□ -0.93
CLSTN3-216ENST00000545663 LINC00614P0C842 121 aa9.25□□□□□ -0.93
CLSTN3-216ENST00000545663 CHCHD1Q96BP2 118 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-216ENST00000545663 UBE2D4Q9Y2X8 147 aa9.24□□□□□ -0.93
CLSTN3-216ENST00000545663 TSPAN13O95857 204 aa9.23□□□□□ -0.93
CLSTN3-216ENST00000545663 MRPS36P82909 103 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-216ENST00000545663 C2orf66Q6UXQ4 117 aa9.23□□□□□ -0.93
CLSTN3-216ENST00000545663 BAGE3Q86Y29 109 aa9.23□□□□□ -0.93
CLSTN3-216ENST00000545663 Q6ZN92 141 aa9.22□□□□□ -0.93
CLSTN3-216ENST00000545663 CDC42SE2Q9NRR3 84 aa9.22□□□□□ -0.93
CLSTN3-216ENST00000545663 IGLV4-60A0A075B6I1 120 aa9.21□□□□□ -0.94
CLSTN3-216ENST00000545663 C1orf137Q5JT78 98 aa9.21□□□□□ -0.94
CLSTN3-216ENST00000545663 TOMM6Q96B49 74 aa9.21□□□□□ -0.94
CLSTN3-216ENST00000545663 TMEM141Q96I45 108 aa9.21□□□□□ -0.94
CLSTN3-216ENST00000545663 TIMM17AQ99595 171 aa9.21□□□□□ -0.94
CLSTN3-216ENST00000545663 RPL39P62891 51 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-216ENST00000545663 ERASQ7Z444 233 aa9.2□□□□□ -0.94
CLSTN3-216ENST00000545663 LINC00474Q9P2X8 69 aa9.2□□□□□ -0.94
CLSTN3-216ENST00000545663 IGLV1-50A0A075B6I6 118 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 GAGE12HA6NDE8 117 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 C1orf196B1AJZ1 125 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 HSBP1O75506 76 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 HBDP02042 147 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 KRTAP1-4P0C5Y4 121 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 LINC01547P58512 204 aaPredicted RBP9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 SS18Q15532 418 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 DIRC1Q969H9 104 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 C2orf88Q9BSF0 95 aa9.19□□□□□ -0.94
CLSTN3-216ENST00000545663 A0A1W2PNN7 141 aa9.18□□□□□ -0.94
CLSTN3-216ENST00000545663 TEX43Q6ZNM6 134 aa9.18□□□□□ -0.94
CLSTN3-216ENST00000545663 SCGB3A1Q96QR1 104 aa9.18□□□□□ -0.94
CLSTN3-216ENST00000545663 VCX2Q9H322 139 aa9.18□□□□□ -0.94
CLSTN3-216ENST00000545663 IGIPA6NJ69 53 aa9.17□□□□□ -0.94
CLSTN3-216ENST00000545663 ATP5LO75964 103 aa9.17□□□□□ -0.94
CLSTN3-216ENST00000545663 CFAP161Q6P656 301 aa9.17□□□□□ -0.94
CLSTN3-216ENST00000545663 H0Y9J4 135 aa9.16□□□□□ -0.94
CLSTN3-216ENST00000545663 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.16□□□□□ -0.94
CLSTN3-216ENST00000545663 SEC11AP67812 179 aa9.16□□□□□ -0.94
CLSTN3-216ENST00000545663 LINC00526Q96FQ7 95 aa9.16□□□□□ -0.94
CLSTN3-216ENST00000545663 IGLV4-3A0A075B6K6 122 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 LINC00959A0A1B0GUT2 108 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BKO60814 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 IGLV7-43P04211 117 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BJP06899 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BOP23527 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BBP33778 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BDP58876 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BCP62807 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST2H2BEQ16778 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 Q6ZUT4 128 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms