RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SUMO2P61956 95 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-214ENST00000542663 SMAGPQ0VAQ4 97 aa10.6□□□□□ -0.71
CLSTN3-214ENST00000542663 UNQ6190/PRO20217Q6UXQ8 127 aa10.6□□□□□ -0.71
CLSTN3-214ENST00000542663 GAGE2EQ4V326 116 aa10.59□□□□□ -0.71
CLSTN3-214ENST00000542663 SMDT1Q9H4I9 107 aa10.59□□□□□ -0.71
CLSTN3-214ENST00000542663 GAGE2DQ9UEU5 116 aa10.59□□□□□ -0.71
CLSTN3-214ENST00000542663 TMEM250H0YL14 139 aa10.58□□□□□ -0.72
CLSTN3-214ENST00000542663 M0QXV9 152 aa10.58□□□□□ -0.72
CLSTN3-214ENST00000542663 KIR2DL4Q99706 377 aa10.58□□□□□ -0.72
CLSTN3-214ENST00000542663 RPL39P62891 51 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-214ENST00000542663 TMEM241Q24JQ0 296 aa10.57□□□□□ -0.72
CLSTN3-214ENST00000542663 UBE2BP63146 152 aa10.56□□□□□ -0.72
CLSTN3-214ENST00000542663 CARHSP1Q9Y2V2 147 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-214ENST00000542663 CEBPGP53567 150 aa10.55□□□□□ -0.72
CLSTN3-214ENST00000542663 EIF5A2Q9GZV4 153 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-214ENST00000542663 TSPAN13O95857 204 aa10.54□□□□□ -0.72
CLSTN3-214ENST00000542663 PPP1R17O96001 155 aa10.54□□□□□ -0.72
CLSTN3-214ENST00000542663 KIAA0087Q14695 138 aa10.54□□□□□ -0.72
CLSTN3-214ENST00000542663 C9orf129Q5T035 196 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-214ENST00000542663 TMEM18Q96B42 140 aa10.54□□□□□ -0.72
CLSTN3-214ENST00000542663 PPP1R2P9O14990 202 aa10.53□□□□□ -0.72
CLSTN3-214ENST00000542663 LINC01551Q86U37 167 aa10.53□□□□□ -0.72
CLSTN3-214ENST00000542663 MRPL51Q4U2R6 128 aaKnown RBP10.52□□□□□ -0.73
CLSTN3-214ENST00000542663 SMIM7Q9BQ49 75 aa10.52□□□□□ -0.73
CLSTN3-214ENST00000542663 ZNF861PO60384 105 aa10.51□□□□□ -0.73
CLSTN3-214ENST00000542663 OSTCQ9NRP0 149 aa10.51□□□□□ -0.73
CLSTN3-214ENST00000542663 SRP19P09132 144 aaKnown RBP10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 MRPS36P82909 103 aaKnown RBP10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 RIGQ13278 110 aa10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 C2orf82Q6UX34 121 aa10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 SPANXA1Q9NS26 97 aa10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 V9GYV3 84 aa10.5□□□□□ -0.73
CLSTN3-214ENST00000542663 MUC17Q685J3 4493 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 TRBV24-1A0A075B6N3 115 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 A0A087X002 238 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 TRBV30A0A0K0K1B3 111 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 IFITM10A6NMD0 228 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 NDUFC2-KCTD14E9PQ53 114 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 RPL32P62910 135 aaKnown RBP10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 FAM104BQ5XKR9 115 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 C20orf78Q9BR46 151 aa10.49□□□□□ -0.73
CLSTN3-214ENST00000542663 ZNF727A8MUV8 499 aa10.48□□□□□ -0.73
CLSTN3-214ENST00000542663 HBBP68871 147 aa10.48□□□□□ -0.73
CLSTN3-214ENST00000542663 TGIF2-C20orf24A0A0A6YYL0 155 aa10.46□□□□□ -0.73
CLSTN3-214ENST00000542663 LINC00862A6NCI5 91 aa10.46□□□□□ -0.73
CLSTN3-214ENST00000542663 SMIM2Q9BVW6 85 aa10.46□□□□□ -0.73
CLSTN3-214ENST00000542663 TCAPO15273 167 aa10.45□□□□□ -0.74
CLSTN3-214ENST00000542663 TNFRSF6BO95407 300 aa10.45□□□□□ -0.74
CLSTN3-214ENST00000542663 LINC00242Q5T6M2 205 aa10.45□□□□□ -0.74
CLSTN3-214ENST00000542663 NUPR1O60356 82 aa10.44□□□□□ -0.74
CLSTN3-214ENST00000542663 CKS2P33552 79 aa10.44□□□□□ -0.74
CLSTN3-214ENST00000542663 NAT8BQ9UHF3 227 aa10.44□□□□□ -0.74
CLSTN3-214ENST00000542663 C9JQL5 133 aa10.43□□□□□ -0.74
CLSTN3-214ENST00000542663 PACRGQ96M98 296 aaPredicted RBP10.43□□□□□ -0.74
CLSTN3-214ENST00000542663 CTDSP1Q9GZU7 261 aa10.43□□□□□ -0.74
CLSTN3-214ENST00000542663 C22orf24Q9Y442 160 aa10.43□□□□□ -0.74
CLSTN3-214ENST00000542663 SRSF3P84103 164 aaKnown RBP10.42□□□□□ -0.74
CLSTN3-214ENST00000542663 PEA15Q15121 130 aa10.42□□□□□ -0.74
CLSTN3-214ENST00000542663 FAM74A3Q4VXF1 159 aa10.42□□□□□ -0.74
CLSTN3-214ENST00000542663 NPYP01303 97 aa10.41□□□□□ -0.74
CLSTN3-214ENST00000542663 LINC00469Q8N7U9 141 aa10.41□□□□□ -0.74
CLSTN3-214ENST00000542663 TYMSOSQ8TAI1 123 aa10.41□□□□□ -0.74
CLSTN3-214ENST00000542663 RETNLBQ9BQ08 111 aa10.41□□□□□ -0.74
CLSTN3-214ENST00000542663 IGLV4-3A0A075B6K6 122 aa10.4□□□□□ -0.74
CLSTN3-214ENST00000542663 D6R8Y8 96 aa10.4□□□□□ -0.74
CLSTN3-214ENST00000542663 RPL23P62829 140 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-214ENST00000542663 ADIRFQ15847 76 aa10.4□□□□□ -0.74
CLSTN3-214ENST00000542663 SMIM27A0A1W2PRY6 76 aa10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 CRYGAP11844 174 aa10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 IFI27P40305 119 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 XAGE1AQ9HD64 81 aa10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 NAT8Q9UHE5 227 aa10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 PYGO1Q9Y3Y4 419 aa10.39□□□□□ -0.75
CLSTN3-214ENST00000542663 KRTAP13-2Q52LG2 175 aa10.38□□□□□ -0.75
CLSTN3-214ENST00000542663 LINC01561Q8N1V8 128 aa10.38□□□□□ -0.75
CLSTN3-214ENST00000542663 RPL28P46779 137 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-214ENST00000542663 TMEM141Q96I45 108 aa10.37□□□□□ -0.75
CLSTN3-214ENST00000542663 ANAPC11Q9NYG5 84 aa10.37□□□□□ -0.75
CLSTN3-214ENST00000542663 A0A1B0GW15 77 aa10.36□□□□□ -0.75
CLSTN3-214ENST00000542663 BCE1O60756 84 aa10.36□□□□□ -0.75
CLSTN3-214ENST00000542663 LBHQ53QV2 105 aaPredicted RBP10.36□□□□□ -0.75
CLSTN3-214ENST00000542663 TPRXLQ17RH7 258 aa10.35□□□□□ -0.75
CLSTN3-214ENST00000542663 ZC2HC1BQ5TFG8 222 aa10.35□□□□□ -0.75
CLSTN3-214ENST00000542663 LINC00173Q6ZV60 143 aa10.35□□□□□ -0.75
CLSTN3-214ENST00000542663 TP73-AS1Q9UF72 201 aa10.35□□□□□ -0.75
CLSTN3-214ENST00000542663 RAB14P61106 215 aa10.34□□□□□ -0.75
CLSTN3-214ENST00000542663 MRPL55Q7Z7F7 128 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-214ENST00000542663 TOMM7Q9P0U1 55 aa10.34□□□□□ -0.75
CLSTN3-214ENST00000542663 A0A1B0GXF2 115 aa10.33□□□□□ -0.76
CLSTN3-214ENST00000542663 MRPL54Q6P161 138 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-214ENST00000542663 TEX43Q6ZNM6 134 aa10.33□□□□□ -0.76
CLSTN3-214ENST00000542663 Q8IZM0 81 aa10.33□□□□□ -0.76
CLSTN3-214ENST00000542663 CDIP1Q9H305 208 aa10.33□□□□□ -0.76
CLSTN3-214ENST00000542663 PRSS2P07478 247 aa10.32□□□□□ -0.76
CLSTN3-214ENST00000542663 RAB5AP20339 215 aa10.32□□□□□ -0.76
CLSTN3-214ENST00000542663 CKS1BP61024 79 aa10.32□□□□□ -0.76
CLSTN3-214ENST00000542663 Q6ZN92 141 aa10.32□□□□□ -0.76
CLSTN3-214ENST00000542663 PPBPP02775 128 aa10.31□□□□□ -0.76
CLSTN3-214ENST00000542663 C6orf226Q5I0X4 101 aa10.31□□□□□ -0.76
CLSTN3-214ENST00000542663 KRTAP13-1Q8IUC0 172 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 197.9 ms