RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HERVK_113P63121 156 aa10.1□□□□□ -0.79
CLIP1-216ENST00000541410 Q8N3U1 123 aa10.1□□□□□ -0.79
CLIP1-216ENST00000541410 IGLV5-45A0A087WSX0 123 aa10.1□□□□□ -0.79
CLIP1-216ENST00000541410 A0A1W2PPM0 123 aa10.1□□□□□ -0.79
CLIP1-216ENST00000541410 ATP5G1P05496 136 aa10.1□□□□□ -0.79
CLIP1-216ENST00000541410 GAGE10A6NGK3 116 aa10.09□□□□□ -0.79
CLIP1-216ENST00000541410 ADAMTSL4-AS1Q5T5F5 129 aa10.09□□□□□ -0.79
CLIP1-216ENST00000541410 DAND5Q8N907 189 aa10.09□□□□□ -0.79
CLIP1-216ENST00000541410 A0A0U1RRA0 63 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 SMIM1B2RUZ4 78 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 IGLL5B9A064 214 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 EGFEM1PQ0D2K5 195 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 SPANXB1Q9NS25 103 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-216ENST00000541410 PRSS2P07478 247 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 MUSTN1Q8IVN3 82 aa10.08□□□□□ -0.8
CLIP1-216ENST00000541410 H7C423 109 aa10.07□□□□□ -0.8
CLIP1-216ENST00000541410 SMAGPQ0VAQ4 97 aa10.07□□□□□ -0.8
CLIP1-216ENST00000541410 SPCS1Q9Y6A9 102 aa10.07□□□□□ -0.8
CLIP1-216ENST00000541410 ZFAND6Q6FIF0 208 aa10.07□□□□□ -0.8
CLIP1-216ENST00000541410 LITAFQ99732 161 aa10.07□□□□□ -0.8
CLIP1-216ENST00000541410 A4D1N5 150 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 FABP2P12104 132 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 RBX1P62877 108 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 Q9H8V8 135 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 PGPEP1Q9NXJ5 209 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 NBEAL1Q6ZS30 2694 aa10.06□□□□□ -0.8
CLIP1-216ENST00000541410 TMEM238LA0A1B0GVL6 79 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 A0A1B0GWB2 263 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 A6NJY4 79 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 TMEM238C9JI98 176 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 CFC1BP0CG36 223 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 CFC1P0CG37 223 aa10.05□□□□□ -0.8
CLIP1-216ENST00000541410 K7EP34 96 aa10.04□□□□□ -0.8
CLIP1-216ENST00000541410 EIF4EBP3O60516 100 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-216ENST00000541410 FAM19A3Q7Z5A8 133 aa10.04□□□□□ -0.8
CLIP1-216ENST00000541410 C5orf38Q86SI9 138 aa10.04□□□□□ -0.8
CLIP1-216ENST00000541410 TOMM7Q9P0U1 55 aa10.04□□□□□ -0.8
CLIP1-216ENST00000541410 IGLV5-39A0A0G2JS06 123 aa10.04□□□□□ -0.8
CLIP1-216ENST00000541410 H7C2G1 150 aa10.03□□□□□ -0.8
CLIP1-216ENST00000541410 XCL1P47992 114 aa10.03□□□□□ -0.8
CLIP1-216ENST00000541410 GTF2H5Q6ZYL4 71 aa10.03□□□□□ -0.8
CLIP1-216ENST00000541410 LINC00959A0A1B0GUT2 108 aa10.02□□□□□ -0.8
CLIP1-216ENST00000541410 NDUFA1O15239 70 aa10.02□□□□□ -0.81
CLIP1-216ENST00000541410 TSPAN13O95857 204 aa10.02□□□□□ -0.81
CLIP1-216ENST00000541410 IGLV10-54A0A075B6I4 117 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 Q6ZTC4 211 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 LINC00269Q8N2A0 174 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 MGAM2Q2M2H8 2515 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 A0A0J9YWU9 116 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 MTURNQ8N3F0 131 aa10.01□□□□□ -0.81
CLIP1-216ENST00000541410 C11orf68Q9H3H3 251 aaKnown RBP10.01□□□□□ -0.81
CLIP1-216ENST00000541410 IGHV3OR16-9A0A0B4J2B5 98 aa10□□□□□ -0.81
CLIP1-216ENST00000541410 ANGP03950 147 aaKnown RBP10□□□□□ -0.81
CLIP1-216ENST00000541410 MRAPQ8TCY5 172 aa10□□□□□ -0.81
CLIP1-216ENST00000541410 LOC107984156A0A0G2JMH3 177 aa10□□□□□ -0.81
CLIP1-216ENST00000541410 RPL24P83731 157 aaKnown RBP10□□□□□ -0.81
CLIP1-216ENST00000541410 MRPL23Q16540 153 aaKnown RBP10□□□□□ -0.81
CLIP1-216ENST00000541410 ARL17AQ8IVW1 177 aa10□□□□□ -0.81
CLIP1-216ENST00000541410 ICOSQ9Y6W8 199 aa9.99□□□□□ -0.81
CLIP1-216ENST00000541410 A0A1B0GUV1 79 aa9.99□□□□□ -0.81
CLIP1-216ENST00000541410 H3BMG7 143 aa9.99□□□□□ -0.81
CLIP1-216ENST00000541410 MIAQ16674 131 aa9.99□□□□□ -0.81
CLIP1-216ENST00000541410 MEIG1Q5JSS6 88 aa9.99□□□□□ -0.81
CLIP1-216ENST00000541410 NANOS2P60321 138 aaKnown RBP9.98□□□□□ -0.81
CLIP1-216ENST00000541410 PRO1854Q9UHT4 67 aa9.98□□□□□ -0.81
CLIP1-216ENST00000541410 COX7B2Q8TF08 81 aa9.97□□□□□ -0.81
CLIP1-216ENST00000541410 DNAH3Q8TD57 4116 aa9.97□□□□□ -0.81
CLIP1-216ENST00000541410 DEFB121Q5J5C9 76 aa9.97□□□□□ -0.81
CLIP1-216ENST00000541410 SPANXDQ9BXN6 97 aa9.96□□□□□ -0.81
CLIP1-216ENST00000541410 SPANXCQ9NY87 97 aa9.96□□□□□ -0.81
CLIP1-216ENST00000541410 SS18Q15532 418 aa9.96□□□□□ -0.82
CLIP1-216ENST00000541410 A0A087WZ39 114 aa9.95□□□□□ -0.82
CLIP1-216ENST00000541410 REG3AQ06141 175 aa9.95□□□□□ -0.82
CLIP1-216ENST00000541410 CIRBPQ14011 172 aaKnown RBP9.95□□□□□ -0.82
CLIP1-216ENST00000541410 KPRPQ5T749 579 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-216ENST00000541410 MDFIQ99750 246 aa9.95□□□□□ -0.82
CLIP1-216ENST00000541410 LYPD5Q6UWN5 251 aa9.94□□□□□ -0.82
CLIP1-216ENST00000541410 IGHV3-33P01772 117 aa9.94□□□□□ -0.82
CLIP1-216ENST00000541410 PSMB2P49721 201 aa9.94□□□□□ -0.82
CLIP1-216ENST00000541410 Q1RN00 199 aa9.94□□□□□ -0.82
CLIP1-216ENST00000541410 SOSTDC1Q6X4U4 206 aa9.94□□□□□ -0.82
CLIP1-216ENST00000541410 LELP1Q5T871 98 aa9.93□□□□□ -0.82
CLIP1-216ENST00000541410 KLK12Q9UKR0 248 aa9.93□□□□□ -0.82
CLIP1-216ENST00000541410 TEX48A0A1B0GUV7 120 aa9.93□□□□□ -0.82
CLIP1-216ENST00000541410 K7EIL1 84 aa9.93□□□□□ -0.82
CLIP1-216ENST00000541410 LINC00308Q8TCZ7 52 aa9.93□□□□□ -0.82
CLIP1-216ENST00000541410 CHCHD10Q8WYQ3 142 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-216ENST00000541410 TIMM17BO60830 172 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 C2orf82Q6UX34 121 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 C11orf45Q8TAV5 145 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 ERG28Q9UKR5 140 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-216ENST00000541410 A0A0B4J2C4 111 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 SCGB1C2P0DMR2 95 aa9.92□□□□□ -0.82
CLIP1-216ENST00000541410 PFN2P35080 140 aa9.91□□□□□ -0.82
CLIP1-216ENST00000541410 WFDC10BQ8IUB3 73 aa9.91□□□□□ -0.82
CLIP1-216ENST00000541410 WFDC2Q14508 124 aa9.9□□□□□ -0.82
CLIP1-216ENST00000541410 C6orf226Q5I0X4 101 aa9.9□□□□□ -0.82
CLIP1-216ENST00000541410 DEFB131BA0A096LNP1 70 aa9.9□□□□□ -0.82
CLIP1-216ENST00000541410 TCL1BO95988 128 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 237.4 ms