RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 UBE2D1P51668 147 aa11.58□□□□□ -0.56
CLSTN3-210ENST00000540931 FOXI1Q12951 378 aa11.58□□□□□ -0.56
CLSTN3-210ENST00000540931 COA6Q5JTJ3 125 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-210ENST00000540931 USP17L23D6RBM5 183 aa11.57□□□□□ -0.56
CLSTN3-210ENST00000540931 MAPKAPK5-AS1Q8N8E1 139 aa11.57□□□□□ -0.56
CLSTN3-210ENST00000540931 CST9LQ9H4G1 147 aa11.57□□□□□ -0.56
CLSTN3-210ENST00000540931 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
CLSTN3-210ENST00000540931 PRSS1P07477 247 aa11.56□□□□□ -0.56
CLSTN3-210ENST00000540931 LINC00173Q6ZV60 143 aa11.56□□□□□ -0.56
CLSTN3-210ENST00000540931 IFI27L1Q96BM0 104 aa11.56□□□□□ -0.56
CLSTN3-210ENST00000540931 TRAV12-1A0A0B4J245 112 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 IGHV3OR16-9A0A0B4J2B5 98 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 TINCRA0A1B0GVN0 87 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 A0A1B0GVY2 172 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 F8WDY8 70 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 PMCHL1Q16048 86 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 LINC00242Q5T6M2 205 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 PKIGQ9Y2B9 76 aa11.55□□□□□ -0.56
CLSTN3-210ENST00000540931 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-210ENST00000540931 OR10D4PQ8NGN7 298 aa11.54□□□□□ -0.56
CLSTN3-210ENST00000540931 FAT2Q9NYQ8 4349 aa11.53□□□□□ -0.56
CLSTN3-210ENST00000540931 A0A087WZ39 114 aa11.53□□□□□ -0.56
CLSTN3-210ENST00000540931 ZNF561-AS1K7EIQ3 104 aa11.53□□□□□ -0.56
CLSTN3-210ENST00000540931 NDUFA6P56556 154 aa11.53□□□□□ -0.56
CLSTN3-210ENST00000540931 FAM19A2Q8N3H0 131 aa11.53□□□□□ -0.56
CLSTN3-210ENST00000540931 GVQW2A0A096LPI5 108 aaPredicted RBP11.52□□□□□ -0.57
CLSTN3-210ENST00000540931 H3BRM9 83 aa11.52□□□□□ -0.57
CLSTN3-210ENST00000540931 S100A6P06703 90 aa11.52□□□□□ -0.57
CLSTN3-210ENST00000540931 SPATA12Q7Z6I5 190 aa11.52□□□□□ -0.57
CLSTN3-210ENST00000540931 PKHD1P08F94 4074 aa11.52□□□□□ -0.57
CLSTN3-210ENST00000540931 DNAH2Q9P225 4427 aa11.51□□□□□ -0.57
CLSTN3-210ENST00000540931 IGLV5-52A0A0A0MRZ9 124 aa11.51□□□□□ -0.57
CLSTN3-210ENST00000540931 hDV102S1A0JD36 115 aa11.51□□□□□ -0.57
CLSTN3-210ENST00000540931 LINC00310P59036 64 aa11.51□□□□□ -0.57
CLSTN3-210ENST00000540931 MAP1LC3CQ9BXW4 147 aa11.51□□□□□ -0.57
CLSTN3-210ENST00000540931 LECT2O14960 151 aa11.5□□□□□ -0.57
CLSTN3-210ENST00000540931 CNBPP62633 177 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-210ENST00000540931 C5orf38Q86SI9 138 aa11.5□□□□□ -0.57
CLSTN3-210ENST00000540931 DNAH17Q9UFH2 4485 aa11.49□□□□□ -0.57
CLSTN3-210ENST00000540931 ABCA13Q86UQ4 5058 aa11.49□□□□□ -0.57
CLSTN3-210ENST00000540931 IGLC3P0DOY3 106 aa11.49□□□□□ -0.57
CLSTN3-210ENST00000540931 IGHV3-64A0A075B6Q5 118 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 IGLV5-45A0A087WSX0 123 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 A0A0J9YXV3 536 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 AKR1D1P51857 326 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 LINC00469Q8N7U9 141 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 C15orf56Q8N910 161 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 C2orf48Q96LS8 159 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 CHTOPQ9Y3Y2 248 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 DNAH11Q96DT5 4516 aa11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 DYNC1H1Q14204 4646 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-210ENST00000540931 F8VRH5 84 aa11.47□□□□□ -0.57
CLSTN3-210ENST00000540931 NUPR1O60356 82 aa11.47□□□□□ -0.57
CLSTN3-210ENST00000540931 C16orf90A8MZG2 172 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 PRSS2P07478 247 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 FABP4P15090 132 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 GCSHP23434 173 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 WFDC2Q14508 124 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 ZC2HC1BQ5TFG8 222 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 CHAC1Q9BUX1 264 aa11.46□□□□□ -0.57
CLSTN3-210ENST00000540931 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-210ENST00000540931 PLNP26678 52 aa11.45□□□□□ -0.58
CLSTN3-210ENST00000540931 COX6A2Q02221 97 aa11.45□□□□□ -0.58
CLSTN3-210ENST00000540931 ORAOV1Q8WV07 137 aa11.45□□□□□ -0.58
CLSTN3-210ENST00000540931 CDKN2A-AS1Q9UH64 79 aa11.45□□□□□ -0.58
CLSTN3-210ENST00000540931 S100A2P29034 98 aa11.44□□□□□ -0.58
CLSTN3-210ENST00000540931 CXCL5P42830 114 aa11.44□□□□□ -0.58
CLSTN3-210ENST00000540931 KRTAP10-2P60368 255 aa11.44□□□□□ -0.58
CLSTN3-210ENST00000540931 SPAG11BQ08648 103 aa11.44□□□□□ -0.58
CLSTN3-210ENST00000540931 SFTA2Q6UW10 78 aa11.43□□□□□ -0.58
CLSTN3-210ENST00000540931 Q8IZM0 81 aa11.43□□□□□ -0.58
CLSTN3-210ENST00000540931 C9orf163Q8N9P6 203 aa11.43□□□□□ -0.58
CLSTN3-210ENST00000540931 IGLV4-69A0A075B6H9 119 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 NDUFA1O15239 70 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 SYCNQ0VAF6 134 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 RNF151Q2KHN1 245 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 HIGD2BQ4VC39 106 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 PET117Q6UWS5 81 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 CAMK2N2Q96S95 79 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 KRTAP4-5Q9BYR2 181 aa11.42□□□□□ -0.58
CLSTN3-210ENST00000540931 PKD1P98161 4303 aa11.41□□□□□ -0.58
CLSTN3-210ENST00000540931 C6orf226Q5I0X4 101 aa11.41□□□□□ -0.58
CLSTN3-210ENST00000540931 C20orf202A1L168 122 aa11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 CKS1BP61024 79 aa11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 ODF1Q14990 250 aa11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 TMEM170BQ5T4T1 132 aa11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 CARD19Q96LW7 228 aa11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 MRPL35Q9NZE8 188 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-210ENST00000540931 C11orf86A6NJI1 115 aa11.39□□□□□ -0.59
CLSTN3-210ENST00000540931 H0Y8G0 127 aa11.39□□□□□ -0.59
CLSTN3-210ENST00000540931 SYS1-DBNDD2H3BUS1 97 aa11.39□□□□□ -0.59
CLSTN3-210ENST00000540931 DPM2O94777 84 aa11.39□□□□□ -0.59
CLSTN3-210ENST00000540931 ZNF22P17026 224 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-210ENST00000540931 SMIM1B2RUZ4 78 aa11.38□□□□□ -0.59
CLSTN3-210ENST00000540931 LINC00474Q9P2X8 69 aa11.38□□□□□ -0.59
CLSTN3-210ENST00000540931 TRBV30A0A0K0K1B3 111 aa11.37□□□□□ -0.59
CLSTN3-210ENST00000540931 IGKCP01834 107 aa11.37□□□□□ -0.59
CLSTN3-210ENST00000540931 HERVK_113P61574 105 aa11.37□□□□□ -0.59
CLSTN3-210ENST00000540931 HIST3H2BBQ8N257 126 aa11.36□□□□□ -0.59
CLSTN3-210ENST00000540931 COX7B2Q8TF08 81 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms