RNA–Protein interactions for RNA: ENST00000540700.1

UBC-208, Transcript of ubiquitin C, human

TSL 2

Gene UBC, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-208	ENST00000540700	PSCA	O43653	123 aa		10.99	□□□□□ -0.65
UBC-208	ENST00000540700	XCL1	P47992	114 aa		10.99	□□□□□ -0.65
UBC-208	ENST00000540700	FLG2	Q5D862	2391 aa	Predicted RBP	10.99	□□□□□ -0.65
UBC-208	ENST00000540700	IFITM10	A6NMD0	228 aa		10.98	□□□□□ -0.65
UBC-208	ENST00000540700	NPS	P0C0P6	89 aa		10.98	□□□□□ -0.65
UBC-208	ENST00000540700	G0S2	P27469	103 aa		10.98	□□□□□ -0.65
UBC-208	ENST00000540700	FUS	P35637	526 aa	Known RBP eCLIP	10.98	□□□□□ -0.65	3e-13	■■■□□ 16.1
UBC-208	ENST00000540700	C1orf196	B1AJZ1	125 aa		10.97	□□□□□ -0.65
UBC-208	ENST00000540700	HSBP1	O75506	76 aa		10.97	□□□□□ -0.65
UBC-208	ENST00000540700	UBE2D1	P51668	147 aa		10.97	□□□□□ -0.65
UBC-208	ENST00000540700	TEX43	Q6ZNM6	134 aa		10.97	□□□□□ -0.65
UBC-208	ENST00000540700	COX11	Q9Y6N1	276 aa		10.97	□□□□□ -0.65
UBC-208	ENST00000540700	COX6A2	Q02221	97 aa		10.96	□□□□□ -0.65
UBC-208	ENST00000540700	SS18	Q15532	418 aa		10.96	□□□□□ -0.65
UBC-208	ENST00000540700	VCX2	Q9H322	139 aa		10.96	□□□□□ -0.65
UBC-208	ENST00000540700	COA6	Q5JTJ3	125 aa	Known RBP	10.95	□□□□□ -0.66
UBC-208	ENST00000540700	LINC00242	Q5T6M2	205 aa		10.95	□□□□□ -0.66
UBC-208	ENST00000540700	LINC01549	A6NIU2	74 aa		10.94	□□□□□ -0.66
UBC-208	ENST00000540700	CD164L2	Q6UWJ8	174 aa		10.94	□□□□□ -0.66
UBC-208	ENST00000540700		Q6ZN92	141 aa		10.94	□□□□□ -0.66
UBC-208	ENST00000540700	C15orf56	Q8N910	161 aa		10.94	□□□□□ -0.66
UBC-208	ENST00000540700	USP17L23	D6RBM5	183 aa		10.93	□□□□□ -0.66
UBC-208	ENST00000540700	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	10.93	□□□□□ -0.66
UBC-208	ENST00000540700	NDUFA6	P56556	154 aa		10.93	□□□□□ -0.66
UBC-208	ENST00000540700		Q8N814	137 aa		10.93	□□□□□ -0.66
UBC-208	ENST00000540700	CST9L	Q9H4G1	147 aa		10.93	□□□□□ -0.66
UBC-208	ENST00000540700	IGHV3OR16-9	A0A0B4J2B5	98 aa		10.92	□□□□□ -0.66
UBC-208	ENST00000540700	FAM19A3	Q7Z5A8	133 aa		10.92	□□□□□ -0.66
UBC-208	ENST00000540700	C2orf88	Q9BSF0	95 aa		10.92	□□□□□ -0.66
UBC-208	ENST00000540700		A0A0J9YXV3	536 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700	ATP5L	O75964	103 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700	PMVK	Q15126	192 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700		Q5VSD8	79 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700	C5orf38	Q86SI9	138 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700	NTN5	Q8WTR8	489 aa	Predicted RBP	10.91	□□□□□ -0.66
UBC-208	ENST00000540700	VPS13B	Q7Z7G8	4022 aa		10.91	□□□□□ -0.66
UBC-208	ENST00000540700	UBR4	Q5T4S7	5183 aa		10.9	□□□□□ -0.66
UBC-208	ENST00000540700	PRSS1	P07477	247 aa		10.9	□□□□□ -0.66
UBC-208	ENST00000540700	PAPPA-AS1	Q5QFB9	102 aa		10.9	□□□□□ -0.66
UBC-208	ENST00000540700	IFI27L1	Q96BM0	104 aa		10.9	□□□□□ -0.66
UBC-208	ENST00000540700	LEPROTL1	O95214	131 aa		10.89	□□□□□ -0.67
UBC-208	ENST00000540700	FABP4	P15090	132 aa		10.89	□□□□□ -0.67
UBC-208	ENST00000540700	IGLV4-69	A0A075B6H9	119 aa		10.88	□□□□□ -0.67
UBC-208	ENST00000540700	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.88	□□□□□ -0.67
UBC-208	ENST00000540700	COX7A2L	O14548	114 aa		10.87	□□□□□ -0.67
UBC-208	ENST00000540700	SLPI	P03973	132 aa		10.87	□□□□□ -0.67
UBC-208	ENST00000540700	XG	P55808	180 aa		10.87	□□□□□ -0.67
UBC-208	ENST00000540700	HIGD2B	Q4VC39	106 aa		10.87	□□□□□ -0.67
UBC-208	ENST00000540700	LINC00526	Q96FQ7	95 aa		10.86	□□□□□ -0.67
UBC-208	ENST00000540700	CDKN2A-AS1	Q9UH64	79 aa		10.86	□□□□□ -0.67
UBC-208	ENST00000540700		A0A087WZ39	114 aa		10.85	□□□□□ -0.67
UBC-208	ENST00000540700	TINCR	A0A1B0GVN0	87 aa		10.85	□□□□□ -0.67
UBC-208	ENST00000540700	IGLC3	P0DOY3	106 aa		10.85	□□□□□ -0.67
UBC-208	ENST00000540700	IGLV5-45	A0A087WSX0	123 aa		10.84	□□□□□ -0.67
UBC-208	ENST00000540700	GVQW2	A0A096LPI5	108 aa	Predicted RBP	10.84	□□□□□ -0.67
UBC-208	ENST00000540700	TRAV12-1	A0A0B4J245	112 aa		10.84	□□□□□ -0.67
UBC-208	ENST00000540700	IGHV1-58	A0A0C4DH39	117 aa		10.84	□□□□□ -0.67
UBC-208	ENST00000540700	EREG	O14944	169 aa		10.84	□□□□□ -0.67
UBC-208	ENST00000540700	SMR3B	P02814	79 aa	Predicted RBP	10.84	□□□□□ -0.67
UBC-208	ENST00000540700	HSPB8	Q9UJY1	196 aa		10.84	□□□□□ -0.67
UBC-208	ENST00000540700	hDV102S1	A0JD36	115 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	C11orf86	A6NJI1	115 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	HERVK_113	P63121	156 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	ODF1	Q14990	250 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	HIST3H2BB	Q8N257	126 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	PGPEP1	Q9NXJ5	209 aa		10.83	□□□□□ -0.68
UBC-208	ENST00000540700	IGHV3-64	A0A075B6Q5	118 aa		10.82	□□□□□ -0.68
UBC-208	ENST00000540700		H0Y8G0	127 aa		10.82	□□□□□ -0.68
UBC-208	ENST00000540700	ZNF22	P17026	224 aa	Predicted RBP	10.82	□□□□□ -0.68
UBC-208	ENST00000540700	MAL	P21145	153 aa		10.82	□□□□□ -0.68
UBC-208	ENST00000540700	LINC01620	Q4KN68	170 aa		10.82	□□□□□ -0.68
UBC-208	ENST00000540700	CHAC1	Q9BUX1	264 aa		10.82	□□□□□ -0.68
UBC-208	ENST00000540700	MRPL35	Q9NZE8	188 aa	Known RBP	10.82	□□□□□ -0.68
UBC-208	ENST00000540700	CHTOP	Q9Y3Y2	248 aa	Known RBP	10.82	□□□□□ -0.68
UBC-208	ENST00000540700		J3QL48	77 aa		10.81	□□□□□ -0.68
UBC-208	ENST00000540700	C14orf177	Q52M58	125 aa		10.81	□□□□□ -0.68
UBC-208	ENST00000540700	CFAP161	Q6P656	301 aa		10.81	□□□□□ -0.68
UBC-208	ENST00000540700	LINC00469	Q8N7U9	141 aa		10.81	□□□□□ -0.68
UBC-208	ENST00000540700	GEMIN7	Q9H840	131 aa	Known RBP	10.81	□□□□□ -0.68
UBC-208	ENST00000540700	IGLV5-52	A0A0A0MRZ9	124 aa		10.8	□□□□□ -0.68
UBC-208	ENST00000540700	SEC11A	P67812	179 aa		10.8	□□□□□ -0.68
UBC-208	ENST00000540700	KIAA0087	Q14695	138 aa		10.8	□□□□□ -0.68
UBC-208	ENST00000540700	ORAOV1	Q8WV07	137 aa		10.8	□□□□□ -0.68
UBC-208	ENST00000540700	PACRG	Q96M98	296 aa	Predicted RBP	10.8	□□□□□ -0.68
UBC-208	ENST00000540700	PMCHL2	Q9BQD1	86 aa		10.8	□□□□□ -0.68
UBC-208	ENST00000540700	SMIM1	B2RUZ4	78 aa		10.79	□□□□□ -0.68
UBC-208	ENST00000540700		F8VRH5	84 aa		10.79	□□□□□ -0.68
UBC-208	ENST00000540700	KRTAP10-1	P60331	282 aa		10.79	□□□□□ -0.68
UBC-208	ENST00000540700	SNRPE	P62304	92 aa	Known RBP	10.79	□□□□□ -0.68
UBC-208	ENST00000540700	SPAG11B	Q08648	103 aa		10.79	□□□□□ -0.68
UBC-208	ENST00000540700	LINC01561	Q8N1V8	128 aa		10.79	□□□□□ -0.68
UBC-208	ENST00000540700	SPINK8	P0C7L1	97 aa		10.78	□□□□□ -0.68
UBC-208	ENST00000540700	C3orf79	P0CE67	100 aa		10.78	□□□□□ -0.68
UBC-208	ENST00000540700	CNBP	P62633	177 aa	Known RBP	10.78	□□□□□ -0.68
UBC-208	ENST00000540700	HAMP	P81172	84 aa		10.78	□□□□□ -0.68
UBC-208	ENST00000540700	C5orf52	A6NGY3	159 aa		10.77	□□□□□ -0.69
UBC-208	ENST00000540700	SYS1-DBNDD2	H3BUS1	97 aa		10.77	□□□□□ -0.69
UBC-208	ENST00000540700	APOM	O95445	188 aa		10.77	□□□□□ -0.69
UBC-208	ENST00000540700	CDPF1	Q6NVV7	123 aa		10.77	□□□□□ -0.69
UBC-208	ENST00000540700	OR10D4P	Q8NGN7	298 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms