RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 URB1-AS1Q96HZ7 61 aa10.22□□□□□ -0.77
RPAIN-206ENST00000539417 hDV102S1A0JD36 115 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 IFITM10A6NMD0 228 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 SMAGPQ0VAQ4 97 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 ORMDL2Q53FV1 153 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 CYSLTR1Q9Y271 337 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 PYGO1Q9Y3Y4 419 aa10.21□□□□□ -0.78
RPAIN-206ENST00000539417 ABCA13Q86UQ4 5058 aa10.2□□□□□ -0.78
RPAIN-206ENST00000539417 LINC01546A6NGU7 62 aa10.2□□□□□ -0.78
RPAIN-206ENST00000539417 IGIPA6NJ69 53 aa10.2□□□□□ -0.78
RPAIN-206ENST00000539417 CD164L2Q6UWJ8 174 aa10.2□□□□□ -0.78
RPAIN-206ENST00000539417 C18orf32Q8TCD1 76 aa10.2□□□□□ -0.78
RPAIN-206ENST00000539417 LINC00173Q6ZV60 143 aa10.19□□□□□ -0.78
RPAIN-206ENST00000539417 LINC00526Q96FQ7 95 aa10.19□□□□□ -0.78
RPAIN-206ENST00000539417 K7EMI3 77 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 FABP4P15090 132 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 PDZD11Q5EBL8 140 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 OR10D4PQ8NGN7 298 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 HIST1H2BLQ99880 126 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 KRTAP4-5Q9BYR2 181 aa10.18□□□□□ -0.78
RPAIN-206ENST00000539417 C5orf38Q86SI9 138 aa10.17□□□□□ -0.78
RPAIN-206ENST00000539417 TOMM6Q96B49 74 aa10.17□□□□□ -0.78
RPAIN-206ENST00000539417 TMEM141Q96I45 108 aa10.17□□□□□ -0.78
RPAIN-206ENST00000539417 PACRGQ96M98 296 aaPredicted RBP10.17□□□□□ -0.78
RPAIN-206ENST00000539417 COX6A2Q02221 97 aa10.17□□□□□ -0.78
RPAIN-206ENST00000539417 Q6ZSA8 131 aa10.17□□□□□ -0.78
RPAIN-206ENST00000539417 PCLOQ9Y6V0 5065 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 A0A096LNJ9 63 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 GVQW2A0A096LPI5 108 aaPredicted RBP10.16□□□□□ -0.78
RPAIN-206ENST00000539417 CNBPP62633 177 aaKnown RBP10.16□□□□□ -0.78
RPAIN-206ENST00000539417 S100A12P80511 92 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 FA2HQ7L5A8 372 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 C9orf163Q8N9P6 203 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 AMELXQ99217 191 aa10.16□□□□□ -0.78
RPAIN-206ENST00000539417 LINC00242Q5T6M2 205 aa10.15□□□□□ -0.78
RPAIN-206ENST00000539417 CFAP161Q6P656 301 aa10.15□□□□□ -0.78
RPAIN-206ENST00000539417 IGHV3OR16-9A0A0B4J2B5 98 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 IGHV1-58A0A0C4DH39 117 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 PANO1I0J062 215 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 COX7A2LO14548 114 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 UBE2D1P51668 147 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 PMCHL1Q16048 86 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 TEX43Q6ZNM6 134 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 BAGE3Q86Y29 109 aa10.14□□□□□ -0.79
RPAIN-206ENST00000539417 SMR3BP02814 79 aaPredicted RBP10.12□□□□□ -0.79
RPAIN-206ENST00000539417 LINC00614P0C842 121 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 PYY3Q5JQD4 70 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 SDIM1Q6ZPB5 146 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 SCGB3A1Q96QR1 104 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 TIMM17AQ99595 171 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 VCX2Q9H322 139 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 AP5S1Q9NUS5 200 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 VPS13BQ7Z7G8 4022 aa10.12□□□□□ -0.79
RPAIN-206ENST00000539417 ERASQ7Z444 233 aa10.11□□□□□ -0.79
RPAIN-206ENST00000539417 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.11□□□□□ -0.79
RPAIN-206ENST00000539417 IGLV4-69A0A075B6H9 119 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 MALP21145 153 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 JOSD1Q15040 202 aaPredicted RBP10.1□□□□□ -0.79
RPAIN-206ENST00000539417 Q6ZN92 141 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 SERF1AO75920 110 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 NPSP0C0P6 89 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 SCXQ7RTU7 201 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 Q8N1X5 172 aa10.1□□□□□ -0.79
RPAIN-206ENST00000539417 PCP4L1A6NKN8 68 aa10.09□□□□□ -0.79
RPAIN-206ENST00000539417 CHTF8P0CG12 524 aa10.09□□□□□ -0.79
RPAIN-206ENST00000539417 G0S2P27469 103 aa10.09□□□□□ -0.79
RPAIN-206ENST00000539417 C2orf88Q9BSF0 95 aa10.09□□□□□ -0.79
RPAIN-206ENST00000539417 IGHV3-64A0A075B6Q5 118 aa10.08□□□□□ -0.8
RPAIN-206ENST00000539417 A0A0J9YXV3 536 aa10.08□□□□□ -0.8
RPAIN-206ENST00000539417 CIRBP-AS1Q8TBR5 109 aa10.08□□□□□ -0.8
RPAIN-206ENST00000539417 A0A087WZ39 114 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 ZNF561-AS1K7EIQ3 104 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 NUPR1O60356 82 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 Q6ZRU5 148 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 FAM19A3Q7Z5A8 133 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 CHAC1Q9BUX1 264 aa10.07□□□□□ -0.8
RPAIN-206ENST00000539417 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.06□□□□□ -0.8
RPAIN-206ENST00000539417 LINC00310P59036 64 aa10.06□□□□□ -0.8
RPAIN-206ENST00000539417 SPAG11BQ08648 103 aa10.06□□□□□ -0.8
RPAIN-206ENST00000539417 ORAOV1Q8WV07 137 aa10.06□□□□□ -0.8
RPAIN-206ENST00000539417 HBDP02042 147 aa10.05□□□□□ -0.8
RPAIN-206ENST00000539417 SYCNQ0VAF6 134 aa10.05□□□□□ -0.8
RPAIN-206ENST00000539417 CARD19Q96LW7 228 aa10.05□□□□□ -0.8
RPAIN-206ENST00000539417 CST9LQ9H4G1 147 aa10.05□□□□□ -0.8
RPAIN-206ENST00000539417 KIAA0087Q14695 138 aa10.04□□□□□ -0.8
RPAIN-206ENST00000539417 PAPPA-AS1Q5QFB9 102 aa10.04□□□□□ -0.8
RPAIN-206ENST00000539417 C10orf25Q5T742 122 aa10.04□□□□□ -0.8
RPAIN-206ENST00000539417 CDKN2A-AS1Q9UH64 79 aa10.04□□□□□ -0.8
RPAIN-206ENST00000539417 APOMO95445 188 aa10.04□□□□□ -0.8
RPAIN-206ENST00000539417 LINC01549A6NIU2 74 aa10.03□□□□□ -0.8
RPAIN-206ENST00000539417 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.03□□□□□ -0.8
RPAIN-206ENST00000539417 CIRBPQ14011 172 aaKnown RBP10.03□□□□□ -0.8
RPAIN-206ENST00000539417 PMVKQ15126 192 aa10.03□□□□□ -0.8
RPAIN-206ENST00000539417 CHCHD1Q96BP2 118 aaKnown RBP10.03□□□□□ -0.8
RPAIN-206ENST00000539417 CAMK2N2Q96S95 79 aa10.03□□□□□ -0.8
RPAIN-206ENST00000539417 A0A096LNI7 61 aa10.02□□□□□ -0.81
RPAIN-206ENST00000539417 Q5VSD8 79 aa10.02□□□□□ -0.81
RPAIN-206ENST00000539417 FAM19A2Q8N3H0 131 aa10.02□□□□□ -0.81
RPAIN-206ENST00000539417 C2orf48Q96LS8 159 aa10.02□□□□□ -0.81
RPAIN-206ENST00000539417 IGKV2-24A0A0C4DH68 120 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 1066.8 ms