RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-233	ENST00000535896	SFTA2	Q6UW10	78 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	C2orf82	Q6UX34	121 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	C11orf72	Q8NBR9	251 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	IL17D	Q8TAD2	202 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	C4orf3	Q8WVX3	66 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	DUX5	Q96PT3	197 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	OVOL2	Q9BRP0	275 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	IMUP	Q9GZP8	106 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	C19orf73	Q9NVV2	129 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896		X6R8D5	127 aa		4.58	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRAV26-1	A0A087WT03	109 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRBV7-7	A0A0K0K1E9	115 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896		H7C423	109 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	COX7A2L	O14548	114 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	IGKV3-20	P01619	116 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1A1	P0DJD3	496 aa	Known RBP	4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1C	P0DJD4	496 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE5	Q13069	117 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE6	Q13070	117 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	DAZ2	Q13117	558 aa	Known RBP	4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1F	Q15415	496 aa	Known RBP	4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	DAZ4	Q86SG3	579 aa	Known RBP	4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	DAZ3	Q9NR90	486 aa	Known RBP	4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	CUBN	O60494	3623 aa		4.57	□□□□□ -1.68
SYNE1-233	ENST00000535896	IGHV3-64	A0A075B6Q5	118 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRAV8-3	A0A0A6YYJ7	113 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRAV4	A0A0B4J268	109 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRAC	P01848	142 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	PRSS2	P07478	247 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	NDUFV3	P56181	108 aa	Known RBP	4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	CMC4	P56277	68 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	DEFB131A	P59861	70 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	DGAT2L7P	Q6IED9	249 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	MAP6D1	Q9H9H5	199 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	STAB1	Q9NY15	2570 aa		4.56	□□□□□ -1.68
SYNE1-233	ENST00000535896	TEX49	A0A1B0GTD5	131 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1B	A6NDE4	496 aa	Known RBP	4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1E	A6NEQ0	496 aa	Known RBP	4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	DNAJC9-AS1	A6NH13	148 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896		H7C2G1	150 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	ATP5G1	P05496	136 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	RBMY1D	P0C7P1	496 aa	Known RBP	4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	RPL36A	P83881	106 aa	Known RBP	4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	TTC32	Q5I0X7	151 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	ADAMTSL4-AS1	Q5T5F5	129 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	LINC00308	Q8TCZ7	52 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	DYNLRB2	Q8TF09	96 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	RPL36AL	Q969Q0	106 aa	Known RBP	4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	FAM110A	Q9BQ89	295 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	CDKN2A-AS1	Q9UH64	79 aa		4.55	□□□□□ -1.68
SYNE1-233	ENST00000535896	KNCN	A6PVL3	124 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	SMIM1	B2RUZ4	78 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896		K7EQD1	137 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	INAFM2	P0DMQ5	153 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	ZNF625	Q96I27	306 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	TMEM101	Q96IK0	257 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	LINC01587	Q99440	93 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	ESM1	Q9NQ30	184 aa		4.54	□□□□□ -1.68
SYNE1-233	ENST00000535896	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	IGHV3OR16-12	A0A075B7B8	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	TRAV13-2	A0A0B4J235	113 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	IGKV2-29	A2NJV5	120 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE12J	A6NER3	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE7	O76087	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE12F	P0CL80	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE12G	P0CL81	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE12I	P0CL82	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	GAGE4	Q13068	117 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	DEFB114	Q30KQ6	69 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	KRTAP21-3	Q3LHN1	58 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	LINC00242	Q5T6M2	205 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	C10orf99	Q6UWK7	81 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	SDIM1	Q6ZPB5	146 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	PRIMA1	Q86XR5	153 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	DAND5	Q8N907	189 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	C15orf53	Q8NAA6	179 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896		Q9H8V8	135 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	ANK2	Q01484	3957 aa		4.53	□□□□□ -1.68
SYNE1-233	ENST00000535896	NHLRC4	P0CG21	123 aa	Predicted RBP	4.53	□□□□□ -1.69
SYNE1-233	ENST00000535896	CXCL5	P42830	114 aa		4.53	□□□□□ -1.69
SYNE1-233	ENST00000535896	SLURP1	P55000	103 aa		4.53	□□□□□ -1.69
SYNE1-233	ENST00000535896	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.53	□□□□□ -1.69
SYNE1-233	ENST00000535896	IGHV3-73	A0A0B4J1V6	119 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896		F5H768	121 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	NDUFA7	O95182	113 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	RPL28	P46779	137 aa	Known RBP	4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	PROK1	P58294	105 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896		Q6ZSN1	163 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	LINC00643	Q86TS7	51 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	STH	Q8IWL8	128 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	DEFB104A	Q8WTQ1	72 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	CLEC2B	Q92478	149 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	C16orf74	Q96GX8	76 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	CDC42SE2	Q9NRR3	84 aa		4.52	□□□□□ -1.69
SYNE1-233	ENST00000535896	TENM1	Q9UKZ4	2725 aa		4.51	□□□□□ -1.69
SYNE1-233	ENST00000535896	FBN1	P35555	2871 aa	Known RBP	4.51	□□□□□ -1.69
SYNE1-233	ENST00000535896	TRBV6-4	A0A1B0GX49	114 aa		4.51	□□□□□ -1.69
SYNE1-233	ENST00000535896	HTN1	P15515	57 aa		4.51	□□□□□ -1.69
SYNE1-233	ENST00000535896	KRTAP24-1	Q3LI83	254 aa		4.51	□□□□□ -1.69
SYNE1-233	ENST00000535896	ODF3L2	Q3SX64	289 aa		4.51	□□□□□ -1.69

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