RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FABP9Q0Z7S8 132 aa8.3□□□□□ -1.08
VPS28-216ENST00000533806 Q5VSD8 79 aa8.3□□□□□ -1.08
VPS28-216ENST00000533806 TOMM6Q96B49 74 aa8.3□□□□□ -1.08
VPS28-216ENST00000533806 TMEM141Q96I45 108 aa8.3□□□□□ -1.08
VPS28-216ENST00000533806 AMELXQ99217 191 aa8.3□□□□□ -1.08
VPS28-216ENST00000533806 IFITM10A6NMD0 228 aa8.29□□□□□ -1.08
VPS28-216ENST00000533806 LINC00242Q5T6M2 205 aa8.29□□□□□ -1.08
VPS28-216ENST00000533806 C5orf38Q86SI9 138 aa8.29□□□□□ -1.08
VPS28-216ENST00000533806 PRSS3P2Q8NHM4 247 aa8.29□□□□□ -1.08
VPS28-216ENST00000533806 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
VPS28-216ENST00000533806 G0S2P27469 103 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 UBE2D1P51668 147 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 COX6A2Q02221 97 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 FAM19A3Q7Z5A8 133 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 TIMM17AQ99595 171 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 TRAPPC1Q9Y5R8 145 aa8.28□□□□□ -1.08
VPS28-216ENST00000533806 FAM229AH3BQW9 127 aa8.27□□□□□ -1.09
VPS28-216ENST00000533806 MALP21145 153 aa8.27□□□□□ -1.09
VPS28-216ENST00000533806 ZC2HC1BQ5TFG8 222 aa8.27□□□□□ -1.09
VPS28-216ENST00000533806 TEX43Q6ZNM6 134 aa8.27□□□□□ -1.09
VPS28-216ENST00000533806 URB1-AS1Q96HZ7 61 aa8.27□□□□□ -1.09
VPS28-216ENST00000533806 IGLV4-69A0A075B6H9 119 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 A0A087WZ39 114 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 ZNF561-AS1K7EIQ3 104 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 KRTAP10-4P60372 401 aaPredicted RBP8.26□□□□□ -1.09
VPS28-216ENST00000533806 ERASQ7Z444 233 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 C18orf32Q8TCD1 76 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 SPACA4Q8TDM5 124 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 C2orf48Q96LS8 159 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 VCX2Q9H322 139 aa8.26□□□□□ -1.09
VPS28-216ENST00000533806 MYCBP2O75592 4640 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 APOMO95445 188 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 CHTF8P0CG12 524 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 SYCNQ0VAF6 134 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 CBLN2Q8IUK8 224 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 LINC00528Q8N1L1 170 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 OR10D4PQ8NGN7 298 aa8.25□□□□□ -1.09
VPS28-216ENST00000533806 A0A096LNJ9 63 aa8.24□□□□□ -1.09
VPS28-216ENST00000533806 LINC01549A6NIU2 74 aa8.24□□□□□ -1.09
VPS28-216ENST00000533806 Q6ZN92 141 aa8.24□□□□□ -1.09
VPS28-216ENST00000533806 CARD19Q96LW7 228 aa8.24□□□□□ -1.09
VPS28-216ENST00000533806 SMCO4Q9NRQ5 59 aa8.24□□□□□ -1.09
VPS28-216ENST00000533806 KIAA0087Q14695 138 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 PAPPA-AS1Q5QFB9 102 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 Q6ZRU5 148 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 FA2HQ7L5A8 372 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 LINC01561Q8N1V8 128 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 SCGB3A1Q96QR1 104 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 C2orf88Q9BSF0 95 aa8.23□□□□□ -1.09
VPS28-216ENST00000533806 A0A087WYN8 130 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 A0A096LNI7 61 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 F8WDY8 70 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 LINC00614P0C842 121 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 SPAG11BQ08648 103 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 PLAC8Q9NZF1 115 aa8.22□□□□□ -1.09
VPS28-216ENST00000533806 INAFM2P0DMQ5 153 aa8.21□□□□□ -1.1
VPS28-216ENST00000533806 RNF151Q2KHN1 245 aa8.21□□□□□ -1.1
VPS28-216ENST00000533806 ORAOV1Q8WV07 137 aa8.21□□□□□ -1.1
VPS28-216ENST00000533806 CAMK2N2Q96S95 79 aa8.21□□□□□ -1.1
VPS28-216ENST00000533806 PLA2G1BP04054 148 aaKnown RBP8.2□□□□□ -1.1
VPS28-216ENST00000533806 CST9LQ9H4G1 147 aa8.2□□□□□ -1.1
VPS28-216ENST00000533806 MRPL35Q9NZE8 188 aaKnown RBP8.2□□□□□ -1.1
VPS28-216ENST00000533806 A0A0J9YXV3 536 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.19□□□□□ -1.1
VPS28-216ENST00000533806 HERVK_113P63121 156 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 SEC11AP67812 179 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 PDZD11Q5EBL8 140 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 C10orf25Q5T742 122 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 LINC00474Q9P2X8 69 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 CDKN2A-AS1Q9UH64 79 aa8.19□□□□□ -1.1
VPS28-216ENST00000533806 IGLV5-45A0A087WSX0 123 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 IGKV2-24A0A0C4DH68 120 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 LOC107984640A0A0U1RRK4 108 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 PTTG1IPP53801 180 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 MAJINQ3KP22 176 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 UNQ6190/PRO20217Q6UXQ8 127 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 PKIGQ9Y2B9 76 aa8.18□□□□□ -1.1
VPS28-216ENST00000533806 FLG2Q5D862 2391 aaPredicted RBP8.17□□□□□ -1.1
VPS28-216ENST00000533806 TINCRA0A1B0GVN0 87 aa8.17□□□□□ -1.1
VPS28-216ENST00000533806 COLCA2A8K830 154 aa8.17□□□□□ -1.1
VPS28-216ENST00000533806 RAB5BP61020 215 aa8.17□□□□□ -1.1
VPS28-216ENST00000533806 DPH3Q96FX2 82 aa8.17□□□□□ -1.1
VPS28-216ENST00000533806 C6orf48Q9UBA6 75 aa8.17□□□□□ -1.1
VPS28-216ENST00000533806 NDUFA1O15239 70 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 HBDP02042 147 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 PMVKQ15126 192 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 PMCHL1Q16048 86 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 PKHD1L1Q86WI1 4243 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 STPG4Q8N801 248 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 HERC1Q15751 4861 aa8.16□□□□□ -1.1
VPS28-216ENST00000533806 TRGC2P03986 189 aa8.15□□□□□ -1.1
VPS28-216ENST00000533806 TLX1NBP0CAT3 122 aa8.15□□□□□ -1.1
VPS28-216ENST00000533806 C2orf82Q6UX34 121 aa8.15□□□□□ -1.1
VPS28-216ENST00000533806 Q8IZM0 81 aa8.15□□□□□ -1.1
VPS28-216ENST00000533806 CHCHD1Q96BP2 118 aaKnown RBP8.15□□□□□ -1.1
VPS28-216ENST00000533806 GEMIN7Q9H840 131 aaKnown RBP8.15□□□□□ -1.1
VPS28-216ENST00000533806 RPL37AP61513 92 aaKnown RBP8.14□□□□□ -1.11
VPS28-216ENST00000533806 TRBV30A0A0K0K1B3 111 aa8.13□□□□□ -1.11
VPS28-216ENST00000533806 A0A1W2PNN7 141 aa8.13□□□□□ -1.11
VPS28-216ENST00000533806 SMIM1B2RUZ4 78 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms