RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 LINC00173Q6ZV60 143 aa12.76□□□□□ -0.37
CPSF1-209ENST00000532725 CBLN2Q8IUK8 224 aa12.76□□□□□ -0.37
CPSF1-209ENST00000532725 LINC00526Q96FQ7 95 aa12.76□□□□□ -0.37
CPSF1-209ENST00000532725 VCX2Q9H322 139 aa12.76□□□□□ -0.37
CPSF1-209ENST00000532725 LINC00242Q5T6M2 205 aa12.75□□□□□ -0.37
CPSF1-209ENST00000532725 ZC2HC1BQ5TFG8 222 aa12.75□□□□□ -0.37
CPSF1-209ENST00000532725 C18orf32Q8TCD1 76 aa12.75□□□□□ -0.37
CPSF1-209ENST00000532725 IGHV3-64A0A075B6Q5 118 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 UBE2D1P51668 147 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 COX6A2Q02221 97 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 FA2HQ7L5A8 372 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 SCXQ7RTU7 201 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 CIRBP-AS1Q8TBR5 109 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 TIMM17AQ99595 171 aa12.74□□□□□ -0.37
CPSF1-209ENST00000532725 ABCA13Q86UQ4 5058 aa12.73□□□□□ -0.37
CPSF1-209ENST00000532725 ZNF561-AS1K7EIQ3 104 aa12.73□□□□□ -0.37
CPSF1-209ENST00000532725 Q6ZN92 141 aa12.73□□□□□ -0.37
CPSF1-209ENST00000532725 ERASQ7Z444 233 aa12.73□□□□□ -0.37
CPSF1-209ENST00000532725 URB1-AS1Q96HZ7 61 aa12.73□□□□□ -0.37
CPSF1-209ENST00000532725 PANO1I0J062 215 aa12.72□□□□□ -0.37
CPSF1-209ENST00000532725 SCGB3A1Q96QR1 104 aa12.72□□□□□ -0.37
CPSF1-209ENST00000532725 C2orf88Q9BSF0 95 aa12.72□□□□□ -0.37
CPSF1-209ENST00000532725 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-209ENST00000532725 IGLV4-69A0A075B6H9 119 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 LINC01549A6NIU2 74 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 EPM2AB3EWF7 344 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 APOMO95445 188 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 LINC00614P0C842 121 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 PAPPA-AS1Q5QFB9 102 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 PCLOQ9Y6V0 5065 aa12.71□□□□□ -0.37
CPSF1-209ENST00000532725 FAM19A3Q7Z5A8 133 aa12.7□□□□□ -0.38
CPSF1-209ENST00000532725 A0A087WZ39 114 aa12.69□□□□□ -0.38
CPSF1-209ENST00000532725 SYCNQ0VAF6 134 aa12.69□□□□□ -0.38
CPSF1-209ENST00000532725 CIRBPQ14011 172 aaKnown RBP12.69□□□□□ -0.38
CPSF1-209ENST00000532725 Q5VSD8 79 aa12.68□□□□□ -0.38
CPSF1-209ENST00000532725 OR10D4PQ8NGN7 298 aa12.68□□□□□ -0.38
CPSF1-209ENST00000532725 C2orf48Q96LS8 159 aa12.68□□□□□ -0.38
CPSF1-209ENST00000532725 A0A096LNJ9 63 aa12.67□□□□□ -0.38
CPSF1-209ENST00000532725 FAM229AH3BQW9 127 aa12.67□□□□□ -0.38
CPSF1-209ENST00000532725 CARD19Q96LW7 228 aa12.67□□□□□ -0.38
CPSF1-209ENST00000532725 RAB5BP61020 215 aa12.66□□□□□ -0.38
CPSF1-209ENST00000532725 ORAOV1Q8WV07 137 aa12.66□□□□□ -0.38
CPSF1-209ENST00000532725 CHTF8P0CG12 524 aa12.65□□□□□ -0.38
CPSF1-209ENST00000532725 SPAG11BQ08648 103 aa12.65□□□□□ -0.38
CPSF1-209ENST00000532725 Q6ZRU5 148 aa12.65□□□□□ -0.38
CPSF1-209ENST00000532725 LINC01561Q8N1V8 128 aa12.65□□□□□ -0.38
CPSF1-209ENST00000532725 CAMK2N2Q96S95 79 aa12.65□□□□□ -0.38
CPSF1-209ENST00000532725 COLCA2A8K830 154 aa12.64□□□□□ -0.39
CPSF1-209ENST00000532725 CST9LQ9H4G1 147 aa12.64□□□□□ -0.39
CPSF1-209ENST00000532725 SRRM2Q9UQ35 2752 aaKnown RBP12.64□□□□□ -0.39
CPSF1-209ENST00000532725 VPS13BQ7Z7G8 4022 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 TRGC2P03986 189 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 SEC11AP67812 179 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 KIAA0087Q14695 138 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 LINC00528Q8N1L1 170 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 SPACA4Q8TDM5 124 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 DPH3Q96FX2 82 aa12.63□□□□□ -0.39
CPSF1-209ENST00000532725 A0A0J9YXV3 536 aa12.62□□□□□ -0.39
CPSF1-209ENST00000532725 F8WDY8 70 aa12.62□□□□□ -0.39
CPSF1-209ENST00000532725 HERVK_113P63121 156 aa12.62□□□□□ -0.39
CPSF1-209ENST00000532725 PMCHL1Q16048 86 aa12.62□□□□□ -0.39
CPSF1-209ENST00000532725 A0A087WYN8 130 aa12.61□□□□□ -0.39
CPSF1-209ENST00000532725 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-209ENST00000532725 HBDP02042 147 aa12.61□□□□□ -0.39
CPSF1-209ENST00000532725 PMVKQ15126 192 aa12.61□□□□□ -0.39
CPSF1-209ENST00000532725 PDZD11Q5EBL8 140 aa12.61□□□□□ -0.39
CPSF1-209ENST00000532725 CDKN2A-AS1Q9UH64 79 aa12.61□□□□□ -0.39
CPSF1-209ENST00000532725 A0A096LNI7 61 aa12.6□□□□□ -0.39
CPSF1-209ENST00000532725 RNF151Q2KHN1 245 aa12.6□□□□□ -0.39
CPSF1-209ENST00000532725 CHCHD1Q96BP2 118 aaKnown RBP12.6□□□□□ -0.39
CPSF1-209ENST00000532725 GEMIN7Q9H840 131 aaKnown RBP12.6□□□□□ -0.39
CPSF1-209ENST00000532725 IGKV2-24A0A0C4DH68 120 aa12.59□□□□□ -0.39
CPSF1-209ENST00000532725 TINCRA0A1B0GVN0 87 aa12.59□□□□□ -0.39
CPSF1-209ENST00000532725 C10orf25Q5T742 122 aa12.59□□□□□ -0.39
CPSF1-209ENST00000532725 MRPL35Q9NZE8 188 aaKnown RBP12.59□□□□□ -0.39
CPSF1-209ENST00000532725 MAJINQ3KP22 176 aa12.58□□□□□ -0.4
CPSF1-209ENST00000532725 UNQ6190/PRO20217Q6UXQ8 127 aa12.58□□□□□ -0.4
CPSF1-209ENST00000532725 PLAC8Q9NZF1 115 aa12.58□□□□□ -0.4
CPSF1-209ENST00000532725 PKIGQ9Y2B9 76 aa12.58□□□□□ -0.4
CPSF1-209ENST00000532725 LOC107984640A0A0U1RRK4 108 aa12.57□□□□□ -0.4
CPSF1-209ENST00000532725 NDUFA1O15239 70 aa12.57□□□□□ -0.4
CPSF1-209ENST00000532725 PLA2G1BP04054 148 aaKnown RBP12.57□□□□□ -0.4
CPSF1-209ENST00000532725 LINC00474Q9P2X8 69 aa12.57□□□□□ -0.4
CPSF1-209ENST00000532725 IGLV5-45A0A087WSX0 123 aa12.56□□□□□ -0.4
CPSF1-209ENST00000532725 SCO1O75880 301 aa12.56□□□□□ -0.4
CPSF1-209ENST00000532725 ATP5LO75964 103 aa12.55□□□□□ -0.4
CPSF1-209ENST00000532725 INAFM2P0DMQ5 153 aa12.55□□□□□ -0.4
CPSF1-209ENST00000532725 PTTG1IPP53801 180 aa12.55□□□□□ -0.4
CPSF1-209ENST00000532725 KRTAP10-4P60372 401 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-209ENST00000532725 GAGE2BQ13066 116 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 C2orf82Q6UX34 121 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 BAGE3Q86Y29 109 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 LINC00469Q8N7U9 141 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 STPG4Q8N801 248 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 C6orf48Q9UBA6 75 aa12.54□□□□□ -0.4
CPSF1-209ENST00000532725 NDUFA6P56556 154 aa12.53□□□□□ -0.4
CPSF1-209ENST00000532725 IGLC3P0DOY3 106 aa12.52□□□□□ -0.41
CPSF1-209ENST00000532725 C6orf226Q5I0X4 101 aa12.52□□□□□ -0.41
CPSF1-209ENST00000532725 Q8IZM0 81 aa12.52□□□□□ -0.41
CPSF1-209ENST00000532725 PACRGQ96M98 296 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms