RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 hDV102S1A0JD36 115 aa9.96□□□□□ -0.82
CPSF1-208ENST00000532560 H7C423 109 aa9.96□□□□□ -0.82
CPSF1-208ENST00000532560 LINC00269Q8N2A0 174 aa9.96□□□□□ -0.82
CPSF1-208ENST00000532560 STPG4Q8N801 248 aa9.96□□□□□ -0.82
CPSF1-208ENST00000532560 KIAA1109Q2LD37 5005 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 IGLV4-60A0A075B6I1 120 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 LINC01549A6NIU2 74 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 TSHBP01222 138 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 SUMO2P61956 95 aaKnown RBP9.95□□□□□ -0.82
CPSF1-208ENST00000532560 WFDC2Q14508 124 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 C20orf78Q9BR46 151 aa9.95□□□□□ -0.82
CPSF1-208ENST00000532560 CDK2AP2O75956 126 aa9.94□□□□□ -0.82
CPSF1-208ENST00000532560 G0S2P27469 103 aa9.94□□□□□ -0.82
CPSF1-208ENST00000532560 FUSP35637 526 aaKnown RBP eCLIP9.94□□□□□ -0.82
CPSF1-208ENST00000532560 HINT1P49773 126 aaPredicted RBP9.94□□□□□ -0.82
CPSF1-208ENST00000532560 REG3AQ06141 175 aa9.94□□□□□ -0.82
CPSF1-208ENST00000532560 CLPSL2Q6UWE3 100 aa9.94□□□□□ -0.82
CPSF1-208ENST00000532560 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.93□□□□□ -0.82
CPSF1-208ENST00000532560 IGKV2-29A2NJV5 120 aaPredicted RBP9.93□□□□□ -0.82
CPSF1-208ENST00000532560 VCYO14598 125 aa9.93□□□□□ -0.82
CPSF1-208ENST00000532560 RPL32P62910 135 aaKnown RBP9.93□□□□□ -0.82
CPSF1-208ENST00000532560 SEC11AP67812 179 aa9.93□□□□□ -0.82
CPSF1-208ENST00000532560 BAALCQ8WXS3 180 aa9.93□□□□□ -0.82
CPSF1-208ENST00000532560 IGLV5-52A0A0A0MRZ9 124 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 H0Y8G0 127 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 FGF6P10767 208 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 ORMDL2Q53FV1 153 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 AMMECR1LQ6DCA0 310 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 KIR2DL4Q99706 377 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 LRP1BQ9NZR2 4599 aa9.92□□□□□ -0.82
CPSF1-208ENST00000532560 TRAV8-4A0A0B4J246 113 aa9.91□□□□□ -0.82
CPSF1-208ENST00000532560 LECT2O14960 151 aa9.91□□□□□ -0.82
CPSF1-208ENST00000532560 BVES-AS1Q5T3Y7 98 aa9.91□□□□□ -0.82
CPSF1-208ENST00000532560 BOD1L2Q8IYS8 172 aa9.91□□□□□ -0.82
CPSF1-208ENST00000532560 KRTAP26-1Q6PEX3 210 aa9.9□□□□□ -0.82
CPSF1-208ENST00000532560 SMIM2Q9BVW6 85 aa9.9□□□□□ -0.82
CPSF1-208ENST00000532560 DNAH5Q8TE73 4624 aa9.89□□□□□ -0.83
CPSF1-208ENST00000532560 GCSHP23434 173 aa9.89□□□□□ -0.83
CPSF1-208ENST00000532560 ODF1Q14990 250 aa9.89□□□□□ -0.83
CPSF1-208ENST00000532560 C14orf177Q52M58 125 aa9.89□□□□□ -0.83
CPSF1-208ENST00000532560 IGLV10-54A0A075B6I4 117 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 TRAV12-1A0A0B4J245 112 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 DPM2O94777 84 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 PRSS1P07477 247 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 KRTAP10-1P60331 282 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 HSD52Q0P140 79 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 HIGD1BQ9P298 99 aa9.88□□□□□ -0.83
CPSF1-208ENST00000532560 A6NDN8 102 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 IGKCP01834 107 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 PLNP26678 52 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 UBE2V1Q13404 147 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 ANKRD39Q53RE8 183 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 C2orf91Q6ZV80 131 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 OR5A1Q8NGJ0 315 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 TMEM101Q96IK0 257 aa9.87□□□□□ -0.83
CPSF1-208ENST00000532560 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.86□□□□□ -0.83
CPSF1-208ENST00000532560 USP17L23D6RBM5 183 aa9.86□□□□□ -0.83
CPSF1-208ENST00000532560 SMAGPQ0VAQ4 97 aa9.86□□□□□ -0.83
CPSF1-208ENST00000532560 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.85□□□□□ -0.83
CPSF1-208ENST00000532560 CSDC2Q9Y534 153 aaKnown RBP9.85□□□□□ -0.83
CPSF1-208ENST00000532560 IGKV3OR2-268A0A0C4DH90 116 aa9.84□□□□□ -0.83
CPSF1-208ENST00000532560 NPSP0C0P6 89 aa9.84□□□□□ -0.83
CPSF1-208ENST00000532560 TOMM6Q96B49 74 aa9.84□□□□□ -0.83
CPSF1-208ENST00000532560 CDC42SE2Q9NRR3 84 aa9.84□□□□□ -0.83
CPSF1-208ENST00000532560 UBE2D4Q9Y2X8 147 aa9.84□□□□□ -0.83
CPSF1-208ENST00000532560 HSPG2P98160 4391 aa9.83□□□□□ -0.84
CPSF1-208ENST00000532560 TAX1BP3O14907 124 aa9.83□□□□□ -0.84
CPSF1-208ENST00000532560 PTTG1IPP53801 180 aa9.83□□□□□ -0.84
CPSF1-208ENST00000532560 TIMM21Q9BVV7 248 aa9.83□□□□□ -0.84
CPSF1-208ENST00000532560 APOBP04114 4563 aaKnown RBP9.82□□□□□ -0.84
CPSF1-208ENST00000532560 DGAT2L7PQ6IED9 249 aa9.82□□□□□ -0.84
CPSF1-208ENST00000532560 CHCHD10Q8WYQ3 142 aaPredicted RBP9.82□□□□□ -0.84
CPSF1-208ENST00000532560 GAGE12HA6NDE8 117 aa9.81□□□□□ -0.84
CPSF1-208ENST00000532560 F8VRH5 84 aa9.81□□□□□ -0.84
CPSF1-208ENST00000532560 H3BRM9 83 aa9.81□□□□□ -0.84
CPSF1-208ENST00000532560 PAPPA-AS1Q5QFB9 102 aa9.81□□□□□ -0.84
CPSF1-208ENST00000532560 SCGB3A1Q96QR1 104 aa9.81□□□□□ -0.84
CPSF1-208ENST00000532560 LINC00959A0A1B0GUT2 108 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 NMUP48645 174 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 XGP55808 180 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 VAMP3Q15836 100 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 TAL2Q16559 108 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 ERASQ7Z444 233 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 SPANXA1Q9NS26 97 aa9.8□□□□□ -0.84
CPSF1-208ENST00000532560 RPL39P62891 51 aaKnown RBP9.79□□□□□ -0.84
CPSF1-208ENST00000532560 Q6ZUT4 128 aa9.79□□□□□ -0.84
CPSF1-208ENST00000532560 CCL25O15444 150 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 FOXI1Q12951 378 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 SS18Q15532 418 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 ZC2HC1BQ5TFG8 222 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 Q6ZSA8 131 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 TMEM141Q96I45 108 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 MRPL35Q9NZE8 188 aaKnown RBP9.78□□□□□ -0.84
CPSF1-208ENST00000532560 CYSLTR1Q9Y271 337 aa9.78□□□□□ -0.84
CPSF1-208ENST00000532560 XCL1P47992 114 aa9.77□□□□□ -0.85
CPSF1-208ENST00000532560 CNBPP62633 177 aaKnown RBP9.77□□□□□ -0.85
CPSF1-208ENST00000532560 MRPS36P82909 103 aaKnown RBP9.77□□□□□ -0.85
CPSF1-208ENST00000532560 CFAP161Q6P656 301 aa9.77□□□□□ -0.85
CPSF1-208ENST00000532560 C2orf66Q6UXQ4 117 aa9.77□□□□□ -0.85
CPSF1-208ENST00000532560 C15orf56Q8N910 161 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms