RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZNF471Q9BX82 626 aaPredicted RBP1.61□□□□□ -2.15
CD44-235ENST00000532339 PXMP4Q9Y6I8 212 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 IGKV2D-26A0A0A0MRZ7 120 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 TGIF2-C20orf24A0A0A6YYL0 155 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 MUC21A0A140T8X8 626 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 SNRPGP15A8MWD9 76 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 M0R2P5 195 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 G6PCP35575 357 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 TAS2R30P59541 319 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 PKIAP61925 76 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 BATFQ16520 125 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 SMCR5Q8TEV8 140 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 MAFIPQ8WZ33 124 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 LPAR5Q9H1C0 372 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 TP73-AS1Q9UF72 201 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 SSR3Q9UNL2 185 aa1.6□□□□□ -2.15
CD44-235ENST00000532339 GVQW2A0A096LPI5 108 aaPredicted RBP1.59□□□□□ -2.15
CD44-235ENST00000532339 FAM24AA6NFZ4 105 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 C11orf86A6NJI1 115 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 J3QRE1 110 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 GNRH2O43555 120 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 FABP1P07148 127 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 NMBP08949 121 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 FGF6P10767 208 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 RPL7P18124 248 aaKnown RBP1.59□□□□□ -2.15
CD44-235ENST00000532339 S100A7P31151 101 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 RNASE4P34096 147 aaKnown RBP1.59□□□□□ -2.15
CD44-235ENST00000532339 XCL1P47992 114 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 HSD17B12Q53GQ0 312 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 HACD4Q5VWC8 232 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 CLPSL2Q6UWE3 100 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 LINC00269Q8N2A0 174 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 FKBP14Q9NWM8 211 aa1.59□□□□□ -2.15
CD44-235ENST00000532339 LSM5Q9Y4Y9 91 aaKnown RBP1.59□□□□□ -2.15
CD44-235ENST00000532339 LOC107984640A0A0U1RRK4 108 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 C20orf202A1L168 122 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 A8MUN3 132 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 INMT-MINDY4F8WBC2 141 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 M0R129 80 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 LST1O00453 97 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 CFDP00746 253 aaPredicted RBP1.58□□□□□ -2.16
CD44-235ENST00000532339 GPX1P07203 203 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 OR4E1P0C645 316 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 UBE2D3P61077 147 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 PMAIP1Q13794 54 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 CFAP126Q5VTH2 177 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 IFT20Q8IY31 132 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 FAM19A2Q8N3H0 131 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 ACBD7Q8N6N7 88 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 CARD19Q96LW7 228 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 HOPXQ9BPY8 73 aaPredicted RBP1.58□□□□□ -2.16
CD44-235ENST00000532339 MIEN1Q9BRT3 115 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 TTTY13Q9BZ97 58 aa1.58□□□□□ -2.16
CD44-235ENST00000532339 PNMA8CA0A1B0GUJ8 204 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 A0A1B0GW54 56 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 PLA2G10O15496 165 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 FAM107AO95990 144 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 NPYP01303 97 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 OR5G3P0C626 314 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 UBE2BP63146 152 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 FABP9Q0Z7S8 132 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 CCDC58Q4VC31 144 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 OR13C8Q8NGS7 320 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 BORCS5Q969J3 196 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 LINC00526Q96FQ7 95 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 Q9BRP9 147 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 PDCD10Q9BUL8 212 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 ENY2Q9NPA8 101 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 PRELID1Q9Y255 219 aa1.57□□□□□ -2.16
CD44-235ENST00000532339 TRBV6-8A0A0A6YYG3 113 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 G3V2T6 193 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 GPR31O00270 319 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 SPINK1P00995 79 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 RPL28P46779 137 aaKnown RBP1.56□□□□□ -2.16
CD44-235ENST00000532339 SULT1A1P50225 295 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 RAB5CP51148 216 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 GTF2A1P52655 376 aaPredicted RBP1.56□□□□□ -2.16
CD44-235ENST00000532339 CEBPGP53567 150 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 C12orf73Q69YU5 71 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 RPL22L1Q6P5R6 122 aaKnown RBP1.56□□□□□ -2.16
CD44-235ENST00000532339 LCN15Q6UWW0 184 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 ZNF818PQ6ZRF7 136 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 DNAJC9Q8WXX5 260 aa1.56□□□□□ -2.16
CD44-235ENST00000532339 RBAKDNA6NC62 111 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 GABARAPH6UMI1 98 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 NUPR1O60356 82 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 PPYP01298 95 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 TAS2R20P59543 309 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 SPCS3P61009 180 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 IFITM2Q01629 132 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 CNBD2Q96M20 576 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 TMEM147Q9BVK8 224 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 UQCC1Q9NVA1 299 aa1.55□□□□□ -2.16
CD44-235ENST00000532339 A0A1B0GV50 99 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 DUXBA0A1W2PPF3 345 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 FNDC10F2Z333 226 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 H3BRN7 92 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 PGLYRP1O75594 196 aaPredicted RBP1.54□□□□□ -2.16
CD44-235ENST00000532339 UCHL1P09936 223 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 BCL2P10415 239 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms