RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 NXT2Q9NPJ8 142 aaKnown RBP8.86□□□□□ -0.99
CPSF1-201ENST00000526271 H7C423 109 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 K7EMI3 77 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 FCER1GP30273 86 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 MAJINQ3KP22 176 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 DPH3Q96FX2 82 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 AP5S1Q9NUS5 200 aa8.85□□□□□ -0.99
CPSF1-201ENST00000526271 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.84□□□□□ -0.99
CPSF1-201ENST00000526271 STPG4Q8N801 248 aa8.84□□□□□ -0.99
CPSF1-201ENST00000526271 LINC00526Q96FQ7 95 aa8.84□□□□□ -0.99
CPSF1-201ENST00000526271 GVQW2A0A096LPI5 108 aaPredicted RBP8.83□□□□□ -1
CPSF1-201ENST00000526271 IGKV3OR2-268A0A0C4DH90 116 aa8.83□□□□□ -1
CPSF1-201ENST00000526271 FOXI1Q12951 378 aa8.83□□□□□ -1
CPSF1-201ENST00000526271 CHCHD10Q8WYQ3 142 aaPredicted RBP8.83□□□□□ -1
CPSF1-201ENST00000526271 URB1-AS1Q96HZ7 61 aa8.83□□□□□ -1
CPSF1-201ENST00000526271 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.82□□□□□ -1
CPSF1-201ENST00000526271 IGKV2-29A2NJV5 120 aaPredicted RBP8.82□□□□□ -1
CPSF1-201ENST00000526271 LINC00614P0C842 121 aa8.82□□□□□ -1
CPSF1-201ENST00000526271 ORMDL2Q53FV1 153 aa8.82□□□□□ -1
CPSF1-201ENST00000526271 AMMECR1LQ6DCA0 310 aa8.82□□□□□ -1
CPSF1-201ENST00000526271 C7orf33Q8WU49 177 aa8.82□□□□□ -1
CPSF1-201ENST00000526271 RAB5BP61020 215 aa8.81□□□□□ -1
CPSF1-201ENST00000526271 CFAP161Q6P656 301 aa8.81□□□□□ -1
CPSF1-201ENST00000526271 FA2HQ7L5A8 372 aa8.8□□□□□ -1
CPSF1-201ENST00000526271 MRPL52Q86TS9 123 aaKnown RBP8.8□□□□□ -1
CPSF1-201ENST00000526271 TMEM18Q96B42 140 aa8.8□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BKO60814 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BJP06899 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 FGF6P10767 208 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BOP23527 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BBP33778 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BDP58876 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BCP62807 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST2H2BEQ16778 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.79□□□□□ -1
CPSF1-201ENST00000526271 RNASEKQ6P5S7 137 aaKnown RBP8.79□□□□□ -1
CPSF1-201ENST00000526271 SPINK6Q6UWN8 80 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BHQ93079 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BNQ99877 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 HIST1H2BMQ99879 126 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 TIMM21Q9BVV7 248 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 UBE2D4Q9Y2X8 147 aa8.79□□□□□ -1
CPSF1-201ENST00000526271 CSDC2Q9Y534 153 aaKnown RBP8.79□□□□□ -1
CPSF1-201ENST00000526271 ZNF25P17030 456 aaPredicted RBP8.78□□□□□ -1
CPSF1-201ENST00000526271 G0S2P27469 103 aa8.78□□□□□ -1
CPSF1-201ENST00000526271 RPL39P62891 51 aaKnown RBP8.78□□□□□ -1
CPSF1-201ENST00000526271 CHCHD1Q96BP2 118 aaKnown RBP8.78□□□□□ -1
CPSF1-201ENST00000526271 MUC2Q02817 5179 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 C1orf196B1AJZ1 125 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 SMAGPQ0VAQ4 97 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 C2orf66Q6UXQ4 117 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 BAGE3Q86Y29 109 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 FAM104AQ969W3 186 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 TOMM6Q96B49 74 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 TMEM101Q96IK0 257 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 PYGO1Q9Y3Y4 419 aa8.77□□□□□ -1.01
CPSF1-201ENST00000526271 A0A1W2PNN7 141 aa8.76□□□□□ -1.01
CPSF1-201ENST00000526271 LINC00310P59036 64 aa8.76□□□□□ -1.01
CPSF1-201ENST00000526271 CDC42SE2Q9NRR3 84 aa8.76□□□□□ -1.01
CPSF1-201ENST00000526271 CYSLTR1Q9Y271 337 aa8.76□□□□□ -1.01
CPSF1-201ENST00000526271 A0A096LNJ9 63 aa8.75□□□□□ -1.01
CPSF1-201ENST00000526271 LINC01549A6NIU2 74 aa8.75□□□□□ -1.01
CPSF1-201ENST00000526271 IGIPA6NJ69 53 aa8.75□□□□□ -1.01
CPSF1-201ENST00000526271 SPANXA1Q9NS26 97 aa8.75□□□□□ -1.01
CPSF1-201ENST00000526271 LINC00959A0A1B0GUT2 108 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 NUPR1O60356 82 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 NPSP0C0P6 89 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 XCL1P47992 114 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 MRPS36P82909 103 aaKnown RBP8.74□□□□□ -1.01
CPSF1-201ENST00000526271 ZNF664Q8N3J9 261 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 OR5A1Q8NGJ0 315 aa8.74□□□□□ -1.01
CPSF1-201ENST00000526271 CCL25O15444 150 aa8.73□□□□□ -1.01
CPSF1-201ENST00000526271 SERF1AO75920 110 aa8.73□□□□□ -1.01
CPSF1-201ENST00000526271 COA6Q5JTJ3 125 aaKnown RBP8.73□□□□□ -1.01
CPSF1-201ENST00000526271 ERASQ7Z444 233 aa8.73□□□□□ -1.01
CPSF1-201ENST00000526271 PKIGQ9Y2B9 76 aa8.73□□□□□ -1.01
CPSF1-201ENST00000526271 HSBP1O75506 76 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 HBDP02042 147 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 PMCHL1Q16048 86 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 PDZD11Q5EBL8 140 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 REG3GQ6UW15 175 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 Q6ZRP5 223 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 KRTAP11-1Q8IUC1 163 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 CARD19Q96LW7 228 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 TIMM17AQ99595 171 aa8.72□□□□□ -1.01
CPSF1-201ENST00000526271 OPRPNQ99935 248 aaPredicted RBP8.72□□□□□ -1.01
CPSF1-201ENST00000526271 IGLV4-3A0A075B6K6 122 aa8.71□□□□□ -1.02
CPSF1-201ENST00000526271 PTTG1IPP53801 180 aa8.71□□□□□ -1.02
CPSF1-201ENST00000526271 Q6ZUT4 128 aa8.71□□□□□ -1.02
CPSF1-201ENST00000526271 TMEM141Q96I45 108 aa8.71□□□□□ -1.02
CPSF1-201ENST00000526271 SCGB3A1Q96QR1 104 aa8.71□□□□□ -1.02
CPSF1-201ENST00000526271 IGHV1-58A0A0C4DH39 117 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 NDUFA6P56556 154 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 SS18Q15532 418 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 FAM19A2Q8N3H0 131 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 AMELXQ99217 191 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 PSORS1C2Q9UIG4 136 aa8.7□□□□□ -1.02
CPSF1-201ENST00000526271 LINC00474Q9P2X8 69 aa8.69□□□□□ -1.02
CPSF1-201ENST00000526271 SYCNQ0VAF6 134 aa8.68□□□□□ -1.02
CPSF1-201ENST00000526271 RNASE13Q5GAN3 156 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms