RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 DCANP1Q8TF63 244 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 RNF185Q96GF1 192 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 TMEM243Q9BU79 118 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 TTTY13Q9BZ97 58 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 DNAH1Q9P2D7 4330 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 DNAH7Q8WXX0 4024 aa3.7□□□□□ -1.82
CD44-218ENST00000525469 IGKV1D-37A0A075B6S9 117 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 TRBV7-6A0A0J9YX20 115 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 H3BRN7 92 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 LY6G6CO95867 125 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 SAA4P35542 130 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 PMAIP1Q13794 54 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 C2orf66Q6UXQ4 117 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 RNF182Q8N6D2 247 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 MRPL53Q96EL3 112 aaKnown RBP3.69□□□□□ -1.82
CD44-218ENST00000525469 LINC00477Q96M19 166 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 UPK3BQ9BT76 320 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 FGF23Q9GZV9 251 aaPredicted RBP3.69□□□□□ -1.82
CD44-218ENST00000525469 ZNF702PQ9H963 129 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 HERC2O95714 4834 aa3.69□□□□□ -1.82
CD44-218ENST00000525469 IGHV3-64DA0A0J9YX35 117 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 COX7A2LO14548 114 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 SAA1P0DJI8 122 aaPredicted RBP3.68□□□□□ -1.82
CD44-218ENST00000525469 SAA2P0DJI9 122 aaPredicted RBP3.68□□□□□ -1.82
CD44-218ENST00000525469 ZNF22P17026 224 aaPredicted RBP3.68□□□□□ -1.82
CD44-218ENST00000525469 UBE2E1P51965 193 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 RHOHQ15669 191 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 SPANXN1Q5VSR9 72 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 ZNF833PQ6ZTB9 187 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 LINC00336Q6ZUF6 198 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 Q8N2B8 174 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 NRACQ8N912 160 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 DYNLRB2Q8TF09 96 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 FAM19A4Q96LR4 140 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 RNF5Q99942 180 aa3.68□□□□□ -1.82
CD44-218ENST00000525469 TRAV7A0A075B6U4 112 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 H3BQ85 93 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 NXPH4O95158 308 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 LYZP61626 148 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 PRB3Q04118 309 aaPredicted RBP3.67□□□□□ -1.82
CD44-218ENST00000525469 KLKP1Q107X0 134 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 DAZ2Q13117 558 aaKnown RBP3.67□□□□□ -1.82
CD44-218ENST00000525469 MIAQ16674 131 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 ZNF876PQ49A33 203 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 RPL39P5Q59GN2 51 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 C9orf66Q5T8R8 295 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 PRR15Q8IV56 129 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 LINC00311Q8N616 119 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 DSCR8Q96T75 97 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 CTSZQ9UBR2 303 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 PKIGQ9Y2B9 76 aa3.67□□□□□ -1.82
CD44-218ENST00000525469 IGHV3-43A0A0B4J1X8 118 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 PLAC8L1A1L4L8 177 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 JMJD7-PLA2G4BH0Y9G9 81 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 H0YGX0 51 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 NDUFB3O43676 98 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 IGHV3-43DP0DP04 118 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 RPL27AP46776 148 aaKnown RBP3.66□□□□□ -1.82
CD44-218ENST00000525469 CRIP1P50238 77 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 ZNF80P51504 273 aaPredicted RBP3.66□□□□□ -1.82
CD44-218ENST00000525469 CRIP2P52943 208 aaPredicted RBP3.66□□□□□ -1.82
CD44-218ENST00000525469 SFTA2Q6UW10 78 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 Q6ZRU5 148 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 MUSTN1Q8IVN3 82 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 DYNAPQ8N1N2 210 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 CD177Q8N6Q3 437 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 DAZ1Q9NQZ3 744 aaKnown RBP3.66□□□□□ -1.82
CD44-218ENST00000525469 TNCP24821 2201 aa3.66□□□□□ -1.82
CD44-218ENST00000525469 FRAS1Q86XX4 4008 aa3.65□□□□□ -1.82
CD44-218ENST00000525469 IGHV4OR15-8A0A075B7B6 117 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 A0A087WW49 117 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 TRAV8-3A0A0A6YYJ7 113 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 TRAV41A0A0B4J266 112 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 SMKR1H3BMG3 65 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 H3BTX0 84 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 SOCS3O14543 225 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 ERC2-IT1O76042 136 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 CGB3P0DN86 165 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 CGB7P0DN87 165 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 FXYD7P58549 80 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 CEMP1Q6PRD7 247 aaPredicted RBP3.65□□□□□ -1.83
CD44-218ENST00000525469 MRPL55Q7Z7F7 128 aaKnown RBP3.65□□□□□ -1.83
CD44-218ENST00000525469 TMEM61Q8N0U2 210 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 EXOC3-AS1Q8N2X6 119 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 BRK1Q8WUW1 75 aa3.65□□□□□ -1.83
CD44-218ENST00000525469 KLK5Q9Y337 293 aaPredicted RBP3.65□□□□□ -1.83
CD44-218ENST00000525469 STARD9Q9P2P6 4700 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 IGLV4-69A0A075B6H9 119 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 TRAV26-2A0A0B4J265 109 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 TRBV6-5A0A0K0K1A5 114 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 H7C2G1 150 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 M0R1W7 72 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 IGKV2-30P06310 120 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 BAALC-AS2P0C853 105 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 BLCAPP62952 87 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 WT1-ASQ06250 92 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 FAM53AQ6NSI3 398 aaPredicted RBP3.64□□□□□ -1.83
CD44-218ENST00000525469 DAZ4Q86SG3 579 aaKnown RBP3.64□□□□□ -1.83
CD44-218ENST00000525469 WDR86Q86TI4 376 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 LY6G5BQ8NDX9 201 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms