RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 MUC7Q8TAX7 377 aa11.87□□□□□ -0.51
PCDHA3-201ENST00000522353 J3KT08 172 aa11.87□□□□□ -0.51
PCDHA3-201ENST00000522353 TRBV30A0A0K0K1B3 111 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 DHRS4-AS1Q9P1J3 65 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 UBE2D3P61077 147 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 UBE2D2P62837 147 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 C11orf21Q9P2W6 132 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 SETD2Q9BYW2 2564 aaPredicted RBP11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 NRACQ8N912 160 aa11.86□□□□□ -0.51
PCDHA3-201ENST00000522353 BRI3O95415 125 aa11.85□□□□□ -0.51
PCDHA3-201ENST00000522353 POLR2KP53803 58 aaKnown RBP11.85□□□□□ -0.51
PCDHA3-201ENST00000522353 IGKV2-28A0A075B6P5 120 aa11.85□□□□□ -0.51
PCDHA3-201ENST00000522353 IGKV2D-28P01615 120 aa11.85□□□□□ -0.51
PCDHA3-201ENST00000522353 MAPKAPK5-AS1Q8N8E1 139 aa11.84□□□□□ -0.51
PCDHA3-201ENST00000522353 UBE2D4Q9Y2X8 147 aa11.84□□□□□ -0.51
PCDHA3-201ENST00000522353 LRP4O75096 1905 aa11.84□□□□□ -0.51
PCDHA3-201ENST00000522353 CASC2Q6XLA1 102 aa11.83□□□□□ -0.52
PCDHA3-201ENST00000522353 NDUFC2O95298 119 aa11.83□□□□□ -0.52
PCDHA3-201ENST00000522353 TRIAP1O43715 76 aa11.83□□□□□ -0.52
PCDHA3-201ENST00000522353 LINC00526Q96FQ7 95 aa11.83□□□□□ -0.52
PCDHA3-201ENST00000522353 TP73-AS1Q9UF72 201 aa11.83□□□□□ -0.52
PCDHA3-201ENST00000522353 SPTBN4Q9H254 2564 aa11.82□□□□□ -0.52
PCDHA3-201ENST00000522353 TEX49A0A1B0GTD5 131 aa11.82□□□□□ -0.52
PCDHA3-201ENST00000522353 PRM2P04554 102 aa11.82□□□□□ -0.52
PCDHA3-201ENST00000522353 TANC2Q9HCD6 1990 aa11.82□□□□□ -0.52
PCDHA3-201ENST00000522353 COX17Q14061 63 aa11.81□□□□□ -0.52
PCDHA3-201ENST00000522353 SLPIP03973 132 aa11.81□□□□□ -0.52
PCDHA3-201ENST00000522353 COL5A1P20908 1838 aaPredicted RBP11.81□□□□□ -0.52
PCDHA3-201ENST00000522353 Q8IZM0 81 aa11.8□□□□□ -0.52
PCDHA3-201ENST00000522353 RETNQ9HD89 108 aa11.8□□□□□ -0.52
PCDHA3-201ENST00000522353 PPDPFQ9H3Y8 114 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 CCKP06307 115 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 C1orf158Q8N1D5 194 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 CDC42SE2Q9NRR3 84 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 CNFNQ9BYD5 112 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 HCFC1P51610 2035 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 USP17L23D6RBM5 183 aa11.79□□□□□ -0.52
PCDHA3-201ENST00000522353 PLAC8L1A1L4L8 177 aa11.77□□□□□ -0.52
PCDHA3-201ENST00000522353 EP400Q96L91 3159 aa11.77□□□□□ -0.53
PCDHA3-201ENST00000522353 Q6ZQY7 126 aa11.76□□□□□ -0.53
PCDHA3-201ENST00000522353 CYSRT1A8MQ03 144 aa11.76□□□□□ -0.53
PCDHA3-201ENST00000522353 SDIM1Q6ZPB5 146 aa11.76□□□□□ -0.53
PCDHA3-201ENST00000522353 Q6ZTC4 211 aa11.76□□□□□ -0.53
PCDHA3-201ENST00000522353 SPINK6Q6UWN8 80 aa11.76□□□□□ -0.53
PCDHA3-201ENST00000522353 A8MZ25 164 aa11.75□□□□□ -0.53
PCDHA3-201ENST00000522353 NHLRC4P0CG21 123 aaPredicted RBP11.75□□□□□ -0.53
PCDHA3-201ENST00000522353 EGFEM1PQ0D2K5 195 aa11.75□□□□□ -0.53
PCDHA3-201ENST00000522353 PKD1L2Q7Z442 2459 aa11.75□□□□□ -0.53
PCDHA3-201ENST00000522353 C20orf197Q8N268 126 aa11.74□□□□□ -0.53
PCDHA3-201ENST00000522353 EDN2P20800 178 aa11.74□□□□□ -0.53
PCDHA3-201ENST00000522353 MRPS12O15235 138 aaKnown RBP11.74□□□□□ -0.53
PCDHA3-201ENST00000522353 RPL28P46779 137 aaKnown RBP11.74□□□□□ -0.53
PCDHA3-201ENST00000522353 UQCRQO14949 82 aa11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 ZNF73O43830 326 aaPredicted RBP11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 ENHOQ6UWT2 76 aa11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 RPL37AP8A6NKH3 93 aa11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 SCXQ7RTU7 201 aa11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 NDUFV3P56181 108 aaKnown RBP11.73□□□□□ -0.53
PCDHA3-201ENST00000522353 IGLV5-52A0A0A0MRZ9 124 aa11.71□□□□□ -0.54
PCDHA3-201ENST00000522353 LST1O00453 97 aa11.71□□□□□ -0.54
PCDHA3-201ENST00000522353 MT-ATP8P03928 68 aa11.71□□□□□ -0.54
PCDHA3-201ENST00000522353 MTORP42345 2549 aa11.71□□□□□ -0.54
PCDHA3-201ENST00000522353 M0QXV9 152 aa11.7□□□□□ -0.54
PCDHA3-201ENST00000522353 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 WDR87Q6ZQQ6 2873 aa11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 FHL2Q14192 279 aa11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 C3orf84H3BNL1 204 aa11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 LINC00310P59036 64 aa11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 LINC00242Q5T6M2 205 aa11.69□□□□□ -0.54
PCDHA3-201ENST00000522353 IGLV9-49A0A0B4J1Y8 123 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 WFDC10BQ8IUB3 73 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 FSHBP01225 129 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 C1orf134Q5TEV5 83 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 C2orf91Q6ZV80 131 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 SMIM11BQ8TCY0 68 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 PTPRSQ13332 1948 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 IGIPA6NJ69 53 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 GAS8-AS1O95177 125 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 UNQ6190/PRO20217Q6UXQ8 127 aa11.68□□□□□ -0.54
PCDHA3-201ENST00000522353 HRCT1Q6UXD1 115 aa11.66□□□□□ -0.54
PCDHA3-201ENST00000522353 FAM236DA0A1B0GTK5 79 aa11.66□□□□□ -0.54
PCDHA3-201ENST00000522353 FAM236CP0DP71 79 aa11.66□□□□□ -0.54
PCDHA3-201ENST00000522353 F8WDY8 70 aa11.65□□□□□ -0.54
PCDHA3-201ENST00000522353 C6orf223Q8N319 242 aa11.65□□□□□ -0.54
PCDHA3-201ENST00000522353 POM121L12Q8N7R1 296 aa11.65□□□□□ -0.54
PCDHA3-201ENST00000522353 IMUPQ9GZP8 106 aa11.65□□□□□ -0.55
PCDHA3-201ENST00000522353 BEAN1Q3B7T3 259 aa11.64□□□□□ -0.55
PCDHA3-201ENST00000522353 CSDC2Q9Y534 153 aaKnown RBP11.64□□□□□ -0.55
PCDHA3-201ENST00000522353 C10orf25Q5T742 122 aa11.63□□□□□ -0.55
PCDHA3-201ENST00000522353 C3orf22Q8N5N4 141 aa11.63□□□□□ -0.55
PCDHA3-201ENST00000522353 POLQO75417 2590 aa11.63□□□□□ -0.55
PCDHA3-201ENST00000522353 FAM19A3Q7Z5A8 133 aa11.62□□□□□ -0.55
PCDHA3-201ENST00000522353 SMIM1B2RUZ4 78 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 Q8N2B8 174 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 ATG2AQ2TAZ0 1938 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 RAI1Q7Z5J4 1906 aaPredicted RBP11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 IGLV4-60A0A075B6I1 120 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 NDUFC1O43677 76 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 COX8CQ7Z4L0 72 aa11.61□□□□□ -0.55
PCDHA3-201ENST00000522353 A0A1B0GUV1 79 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms