RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NDUFA4L2Q9NRX3 87 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 MAP1AP78559 2803 aaPredicted RBP4.13□□□□□ -1.75
LSM1-202ENST00000520286 NSD1Q96L73 2696 aaPredicted RBP4.13□□□□□ -1.75
LSM1-202ENST00000520286 IGHV3-21A0A0B4J1V1 117 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 LINC01549A6NIU2 74 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 MRPL33O75394 65 aaKnown RBP4.13□□□□□ -1.75
LSM1-202ENST00000520286 IGLC6P0CF74 106 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 COX6A1P12074 109 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 CRIP1P50238 77 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 MP68P56378 58 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 KRTAP13-2Q52LG2 175 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 MEIG1Q5JSS6 88 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 IGFL1Q6UW32 110 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 LYZL1Q6UWQ5 148 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 LYPD1Q8N2G4 141 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 Q8N8P6 123 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 SHANK2-AS3Q9BTD1 123 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 SPANXCQ9NY87 97 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 DSCAML1Q8TD84 2053 aa4.13□□□□□ -1.75
LSM1-202ENST00000520286 ZGRF1Q86YA3 2104 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 IGHV3OR15-7A0A075B7D8 119 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 M0R2P5 195 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 SAA2P0DJI9 122 aaPredicted RBP4.12□□□□□ -1.75
LSM1-202ENST00000520286 P0DMU3 169 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 FAM231AP0DMU4 169 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 FAM231CP0DMU5 169 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 SLC25A16P16260 332 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 FXYD7P58549 80 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 RPS28P62857 69 aaKnown RBP4.12□□□□□ -1.75
LSM1-202ENST00000520286 DEFB121Q5J5C9 76 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 NDUFA11Q86Y39 141 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 MRPL35Q9NZE8 188 aaKnown RBP4.12□□□□□ -1.75
LSM1-202ENST00000520286 MRPL36Q9P0J6 103 aaKnown RBP4.12□□□□□ -1.75
LSM1-202ENST00000520286 MED12Q93074 2177 aa4.12□□□□□ -1.75
LSM1-202ENST00000520286 TRAV8-1A0A0A6YYK1 113 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 F8VRH5 84 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 SLC25A20O43772 301 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 SAA1P0DJI8 122 aaPredicted RBP4.11□□□□□ -1.75
LSM1-202ENST00000520286 CKS2P33552 79 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 ERHP84090 104 aaKnown RBP4.11□□□□□ -1.75
LSM1-202ENST00000520286 Q6ZQT7 251 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 GOLT1AQ6ZVE7 132 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 C10orf126Q8N4M7 172 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 TMEM167AQ8TBQ9 72 aa4.11□□□□□ -1.75
LSM1-202ENST00000520286 FLNAP21333 2647 aaKnown RBP4.11□□□□□ -1.75
LSM1-202ENST00000520286 HIVEP2P31629 2446 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 TRBV19A0A075B6N1 114 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 IGKV1D-17A0A075B6S4 117 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 J3KT08 172 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 IGHG2P01859 326 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 TRGV3P03979 118 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 TFF1P04155 84 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 TNFAIP6P98066 277 aaPredicted RBP4.1□□□□□ -1.75
LSM1-202ENST00000520286 WT1-ASQ06250 92 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 HES1Q14469 280 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 TEX36Q5VZQ5 186 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 ZNF826PQ6ZT77 177 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 ZNF833PQ6ZTB9 187 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 C15orf53Q8NAA6 179 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 IMUPQ9GZP8 106 aa4.1□□□□□ -1.75
LSM1-202ENST00000520286 LOC107984156A0A0G2JMH3 177 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 H3BRN7 92 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 SH2D1AO60880 128 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 ATP5G1P05496 136 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 HLA-DMBP28068 263 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 ARL17AQ8IVW1 177 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 ZNRF2Q8NHG8 242 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 LINC00526Q96FQ7 95 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 HIGD1AQ9Y241 93 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 FAM215AQ9Y5M1 114 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 ICOSQ9Y6W8 199 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 MXRA5Q9NR99 2828 aa4.09□□□□□ -1.75
LSM1-202ENST00000520286 SEC16AO15027 2179 aa4.09□□□□□ -1.76
LSM1-202ENST00000520286 CNTRLQ7Z7A1 2325 aa4.09□□□□□ -1.76
LSM1-202ENST00000520286 TRAV2A0A0B4J234 112 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 A0A0B4J2C4 111 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 A0A0J9YY99 117 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 E7EUB6 86 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 NPFFO15130 113 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 IGHV3-30P01768 117 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 IGKV1-16P04430 117 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 LINC00694P0DN24 101 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 IGHV3-30-5P0DP03 117 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 ORM2P19652 201 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 PDE6HQ13956 83 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 EDDM3AQ14507 147 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 EXOC3-AS1Q8N2X6 119 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 C3orf22Q8N5N4 141 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 RNASE6Q93091 150 aaKnown RBP4.08□□□□□ -1.76
LSM1-202ENST00000520286 PLEKHB2Q96CS7 222 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 PRADC1Q9BSG0 188 aa4.08□□□□□ -1.76
LSM1-202ENST00000520286 TRBV10-2A0A0K0K1G8 114 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 ZNF815PA8K554 130 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 A8MWP4 228 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 C9JAW5 83 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 H3BMM0 161 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 H3BT86 120 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 UQCRQO14949 82 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 IGHV3-33P01772 117 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 RPL7P18124 248 aaKnown RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms