RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 HNRNPA3P51991 378 aaKnown RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 MUC21Q5SSG8 566 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 FA2HQ7L5A8 372 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 COMMD7Q86VX2 200 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 UBE2DNLQ8IWF7 75 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 ORMDL3Q8N138 153 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 PAM16Q9Y3D7 125 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 IGHV3-38A0A0C4DH36 116 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 OR10J3Q5JRS4 329 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 OR10D4PQ8NGN7 298 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 CHCHD1Q96BP2 118 aaKnown RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 SMIM2Q9BVW6 85 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 A0A087WZ39 114 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 GVQW2A0A096LPI5 108 aaPredicted RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 LRCOL1A6NCL2 159 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 APCSP02743 223 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 TLX1NBP0CAT3 122 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 TWIST1Q15672 202 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 TMEM136Q6ZRR5 245 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 Q6ZSA8 131 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 C14orf178Q8N769 122 aaPredicted RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 LRP1Q07954 4544 aaKnown RBP1.89□□□□□ -2.11
MCF2-208ENST00000519895 IGLV5-45A0A087WSX0 123 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 TSHBP01222 138 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 ADCYAP1P18509 176 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 MRPL51Q4U2R6 128 aaKnown RBP1.88□□□□□ -2.11
MCF2-208ENST00000519895 ZNF664Q8N3J9 261 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 C20orf203Q8NBC4 194 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 URB1-AS1Q96HZ7 61 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 AMELXQ99217 191 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 KIR2DL4Q99706 377 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 RNASE7Q9H1E1 156 aaKnown RBP1.88□□□□□ -2.11
MCF2-208ENST00000519895 SMCO4Q9NRQ5 59 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 LINC00846Q9NV44 126 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 CXCL5P42830 114 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 ADIRFQ15847 76 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 ZNF56Q15929 161 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 Q6ZVQ6 151 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 SAMD10Q9BYL1 202 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 MAP1LC3AQ9H492 121 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 V9GYY9 64 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 IGLV10-54A0A075B6I4 117 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 TRAV12-1A0A0B4J245 112 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 IGHV1-58A0A0C4DH39 117 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 LOC105371267A0A1B0GV96 52 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 GRIFINA4D1Z8 144 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 SDHAF1A6NFY7 115 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 PDZD11Q5EBL8 140 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 COA6Q5JTJ3 125 aaKnown RBP1.88□□□□□ -2.11
MCF2-208ENST00000519895 NTM-AS1Q6ZSK4 140 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 TOMM6Q96B49 74 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 TMEM101Q96IK0 257 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 CDC42SE2Q9NRR3 84 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 LINC00474Q9P2X8 69 aa1.88□□□□□ -2.11
MCF2-208ENST00000519895 A0A087WTM6 91 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 C7orf77A4D0Y5 90 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 NUDT3O95989 172 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 S100A1P23297 94 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 AMTP48728 403 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 Q6ZQT7 251 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 FAM218AQ96MZ4 157 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 UBE2D4Q9Y2X8 147 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 FSIP2Q5CZC0 6907 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 GAGE5Q13069 117 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 GAGE6Q13070 117 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 Q8N814 137 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 PRELID3AQ96N28 172 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 DNAH8Q96JB1 4490 aa1.87□□□□□ -2.11
MCF2-208ENST00000519895 TRAV26-2A0A0B4J265 109 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 DEFB4AO15263 64 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 APOMO95445 188 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 FCER1GP30273 86 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 CKS2P33552 79 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 RBX1P62877 108 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 RPL24P83731 157 aaKnown RBP1.86□□□□□ -2.11
MCF2-208ENST00000519895 LINC00242Q5T6M2 205 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 ENHOQ6UWT2 76 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 MPLKIPQ8TAP9 179 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 LINC00526Q96FQ7 95 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 Q9HAA7 133 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 TRBV30A0A0K0K1B3 111 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 TINCRA0A1B0GVN0 87 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 IGIPA6NJ69 53 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 C1orf196B1AJZ1 125 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 M0R036 132 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 UBE2L6O14933 153 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 HSBP1O75506 76 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 FABP9Q0Z7S8 132 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 SS18Q15532 418 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 SPATA12Q7Z6I5 190 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP2-2Q9BYT5 123 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP2-1Q9BYU5 128 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 CYSLTR1Q9Y271 337 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 IGLV5-37A0A075B6J1 123 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 IGLV9-49A0A0B4J1Y8 123 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 LOC107984156A0A0G2JMH3 177 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 CRPP02741 224 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 IGLC3P0DOY3 106 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 FGF6P10767 208 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms