RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 NUPR1O60356 82 aa6.36□□□□□ -1.39
DDX41-216ENST00000513562 LINC01547P58512 204 aaPredicted RBP6.36□□□□□ -1.39
DDX41-216ENST00000513562 C9orf129Q5T035 196 aaKnown RBP6.36□□□□□ -1.39
DDX41-216ENST00000513562 IGLV7-46A0A075B6I9 117 aa6.35□□□□□ -1.39
DDX41-216ENST00000513562 K7EN84 100 aa6.35□□□□□ -1.39
DDX41-216ENST00000513562 FCER1GP30273 86 aa6.35□□□□□ -1.39
DDX41-216ENST00000513562 MED9Q9NWA0 146 aa6.35□□□□□ -1.39
DDX41-216ENST00000513562 NDUFC2-KCTD14E9PQ53 114 aa6.34□□□□□ -1.39
DDX41-216ENST00000513562 VCYO14598 125 aa6.34□□□□□ -1.39
DDX41-216ENST00000513562 RAB14P61106 215 aa6.34□□□□□ -1.39
DDX41-216ENST00000513562 BLOC1S1P78537 153 aa6.34□□□□□ -1.39
DDX41-216ENST00000513562 TIMM21Q9BVV7 248 aa6.34□□□□□ -1.39
DDX41-216ENST00000513562 TRBV30A0A0K0K1B3 111 aa6.33□□□□□ -1.4
DDX41-216ENST00000513562 KIAA0087Q14695 138 aa6.33□□□□□ -1.4
DDX41-216ENST00000513562 KRTAP13-2Q52LG2 175 aa6.33□□□□□ -1.4
DDX41-216ENST00000513562 LINC00173Q6ZV60 143 aa6.33□□□□□ -1.4
DDX41-216ENST00000513562 CTDSP1Q9GZU7 261 aa6.33□□□□□ -1.4
DDX41-216ENST00000513562 RPL28P46779 137 aaKnown RBP6.32□□□□□ -1.4
DDX41-216ENST00000513562 LINC00304Q8N9R0 145 aa6.32□□□□□ -1.4
DDX41-216ENST00000513562 FAM104AQ969W3 186 aa6.32□□□□□ -1.4
DDX41-216ENST00000513562 TMEM191AQ9H0A3 160 aa6.32□□□□□ -1.4
DDX41-216ENST00000513562 RAB4AP20338 218 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 SRSF3P84103 164 aaKnown RBP6.31□□□□□ -1.4
DDX41-216ENST00000513562 OCC1Q8TAD7 63 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 TMEM18Q96B42 140 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 KIR2DL4Q99706 377 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 ANAPC11Q9NYG5 84 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 C22orf24Q9Y442 160 aa6.31□□□□□ -1.4
DDX41-216ENST00000513562 A8MWL6 223 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 BCE1O60756 84 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 SUMO2P61956 95 aaKnown RBP6.3□□□□□ -1.4
DDX41-216ENST00000513562 CTAG1AP78358 180 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 LINC00242Q5T6M2 205 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 AMN1Q8IY45 258 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 NRACQ8N912 160 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 BORCS7Q96B45 105 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 PPDPFQ9H3Y8 114 aa6.3□□□□□ -1.4
DDX41-216ENST00000513562 SMKR1H3BMG3 65 aa6.29□□□□□ -1.4
DDX41-216ENST00000513562 GATCO43716 136 aaKnown RBP6.29□□□□□ -1.4
DDX41-216ENST00000513562 TAGLN2P37802 199 aaKnown RBP6.29□□□□□ -1.4
DDX41-216ENST00000513562 IFITM2Q01629 132 aa6.29□□□□□ -1.4
DDX41-216ENST00000513562 LBHQ53QV2 105 aaPredicted RBP6.29□□□□□ -1.4
DDX41-216ENST00000513562 CT83Q5H943 113 aa6.29□□□□□ -1.4
DDX41-216ENST00000513562 C2orf82Q6UX34 121 aa6.29□□□□□ -1.4
DDX41-216ENST00000513562 FAM231DQ6ZW35 169 aa6.29□□□□□ -1.4
DDX41-216ENST00000513562 PACRGQ96M98 296 aaPredicted RBP6.29□□□□□ -1.4
DDX41-216ENST00000513562 A0A1B0GUT8 65 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 IFITM10A6NMD0 228 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 PPP1R17O96001 155 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 RPL39P62891 51 aaKnown RBP6.28□□□□□ -1.4
DDX41-216ENST00000513562 HBBP68871 147 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 MRPS36P82909 103 aaKnown RBP6.28□□□□□ -1.4
DDX41-216ENST00000513562 ASB16-AS1Q495Z4 193 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 FAM229BQ4G0N7 80 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 CLLU1Q5K131 121 aa6.28□□□□□ -1.4
DDX41-216ENST00000513562 TGIF2-C20orf24A0A0A6YYL0 155 aa6.27□□□□□ -1.41
DDX41-216ENST00000513562 PPP1R2P9O14990 202 aa6.27□□□□□ -1.41
DDX41-216ENST00000513562 KRTAP4-1Q9BYQ7 146 aa6.27□□□□□ -1.41
DDX41-216ENST00000513562 SPANXA1Q9NS26 97 aa6.27□□□□□ -1.41
DDX41-216ENST00000513562 TP73-AS1Q9UF72 201 aa6.27□□□□□ -1.41
DDX41-216ENST00000513562 ZNF727A8MUV8 499 aa6.26□□□□□ -1.41
DDX41-216ENST00000513562 HIGD1CA8MV81 97 aa6.26□□□□□ -1.41
DDX41-216ENST00000513562 MRPL55Q7Z7F7 128 aaKnown RBP6.26□□□□□ -1.41
DDX41-216ENST00000513562 KRTAP13-1Q8IUC0 172 aa6.26□□□□□ -1.41
DDX41-216ENST00000513562 LINC00469Q8N7U9 141 aa6.26□□□□□ -1.41
DDX41-216ENST00000513562 EIF5A2Q9GZV4 153 aaKnown RBP6.26□□□□□ -1.41
DDX41-216ENST00000513562 XAGE1AQ9HD64 81 aa6.25□□□□□ -1.41
DDX41-216ENST00000513562 TCAPO15273 167 aa6.24□□□□□ -1.41
DDX41-216ENST00000513562 RPL32P62910 135 aaKnown RBP6.24□□□□□ -1.41
DDX41-216ENST00000513562 PEA15Q15121 130 aa6.24□□□□□ -1.41
DDX41-216ENST00000513562 C20orf78Q9BR46 151 aa6.24□□□□□ -1.41
DDX41-216ENST00000513562 IGKV2D-26A0A0A0MRZ7 120 aa6.23□□□□□ -1.41
DDX41-216ENST00000513562 FP248Q71RG6 208 aaPredicted RBP6.23□□□□□ -1.41
DDX41-216ENST00000513562 LINC01561Q8N1V8 128 aa6.23□□□□□ -1.41
DDX41-216ENST00000513562 TRBV24-1A0A075B6N3 115 aa6.22□□□□□ -1.41
DDX41-216ENST00000513562 CEBPGP53567 150 aa6.22□□□□□ -1.41
DDX41-216ENST00000513562 KRTAP13-3Q3SY46 172 aa6.22□□□□□ -1.41
DDX41-216ENST00000513562 MRPL51Q4U2R6 128 aaKnown RBP6.22□□□□□ -1.41
DDX41-216ENST00000513562 COMMD7Q86VX2 200 aa6.22□□□□□ -1.41
DDX41-216ENST00000513562 LINC00337Q8N6G1 96 aa6.22□□□□□ -1.41
DDX41-216ENST00000513562 RPL37AP8A6NKH3 93 aa6.21□□□□□ -1.42
DDX41-216ENST00000513562 TMEM250H0YL14 139 aa6.21□□□□□ -1.42
DDX41-216ENST00000513562 RIGQ13278 110 aa6.21□□□□□ -1.42
DDX41-216ENST00000513562 LCE2CQ5TA81 110 aa6.21□□□□□ -1.42
DDX41-216ENST00000513562 LINC00167Q96N53 147 aa6.21□□□□□ -1.42
DDX41-216ENST00000513562 IGLV4-3A0A075B6K6 122 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 LINC00862A6NCI5 91 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 PRSS2P07478 247 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 UBE2AP49459 152 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 SEC61BP60468 96 aaKnown RBP6.2□□□□□ -1.42
DDX41-216ENST00000513562 CKS1BP61024 79 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 FAM104BQ5XKR9 115 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 UQCC3Q6UW78 93 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 SMIM2Q9BVW6 85 aa6.2□□□□□ -1.42
DDX41-216ENST00000513562 SRP19P09132 144 aaKnown RBP6.19□□□□□ -1.42
DDX41-216ENST00000513562 IFI27P40305 119 aaPredicted RBP6.19□□□□□ -1.42
DDX41-216ENST00000513562 NDUFA5Q16718 116 aa6.19□□□□□ -1.42
DDX41-216ENST00000513562 PYGO1Q9Y3Y4 419 aa6.19□□□□□ -1.42
DDX41-216ENST00000513562 GAGE10A6NGK3 116 aa6.18□□□□□ -1.42
DDX41-216ENST00000513562 TNFRSF6BO95407 300 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms