RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 HIGD2AQ9BW72 106 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 FRYLO94915 3013 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 TECTAO75443 2155 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 PLAC8L1A1L4L8 177 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 Q8N3U1 123 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 HIVEP3Q5T1R4 2406 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 PRRC2CQ9Y520 2896 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 ARHGAP32A7KAX9 2087 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 LINC01548A6NM66 108 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 B9D2Q9BPU9 175 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 SPAG11AQ6PDA7 123 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 C7orf33Q8WU49 177 aa6.54□□□□□ -1.36
LIMCH1-218ENST00000513024 LAMA1P25391 3075 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 IGLV1-47P01700 117 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 BRWD1-AS2P59051 145 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 P0C879 139 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 Q8NA96 180 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 TRBV6-5A0A0K0K1A5 114 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 IGHV4-31P0DP07 118 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 CD164Q04900 197 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 NTM-AS1Q6ZSK4 140 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 UNQ9165/PRO28630Q6UXU0 137 aa6.53□□□□□ -1.36
LIMCH1-218ENST00000513024 KIR2DL5BQ8NHK3 375 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 ZNF462Q96JM2 2506 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 A0A096LNI7 61 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 TNFRSF13BO14836 293 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 CDIP1Q9H305 208 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 UBE2D4Q9Y2X8 147 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 IGLV4-3A0A075B6K6 122 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 IGHV4-30-4P0DP06 118 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 GPHB5Q86YW7 130 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 SPEGQ15772 3267 aa6.52□□□□□ -1.37
LIMCH1-218ENST00000513024 NUPR2A6NF83 97 aa6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 LY6G6CO95867 125 aa6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 UBE2D3P61077 147 aa6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 MSMPQ1L6U9 139 aa6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 TNRC6BQ9UPQ9 1833 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 C5orf56Q8N8D9 126 aa6.51□□□□□ -1.37
LIMCH1-218ENST00000513024 ATG2AQ2TAZ0 1938 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 NHLRC4P0CG21 123 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 LINC00269Q8N2A0 174 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 ZFAND2AQ8N6M9 145 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 HHLA3Q9XRX5 114 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 C8orf87E5RJ46 101 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 RNASE3P12724 160 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 SMIM11BQ8TCY0 68 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 KLK12Q9UKR0 248 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 EXPH5Q8NEV8 1989 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 TRAV10A0A0B4J240 114 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 DEFB4AO15263 64 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 Q8N7P7 452 aa6.5□□□□□ -1.37
LIMCH1-218ENST00000513024 PIEZO2Q9H5I5 2752 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 UBE2D1P51668 147 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 CRIP2P52943 208 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 U3KQK5 164 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 TANC2Q9HCD6 1990 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 Q6ZS46 218 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 COL5A1P20908 1838 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 NAV2Q8IVL1 2488 aa6.49□□□□□ -1.37
LIMCH1-218ENST00000513024 A0A0J9YX75 114 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 IGF1P05019 195 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 NCKAP5O14513 1909 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 hDV103S1A0JD37 113 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 K7EMT4 169 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 CRIP1P50238 77 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 DEFB135Q30KP9 77 aa6.48□□□□□ -1.37
LIMCH1-218ENST00000513024 WISP2O76076 250 aa6.47□□□□□ -1.37
LIMCH1-218ENST00000513024 EIF4EBP1Q13541 118 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-218ENST00000513024 Q6YL49 198 aa6.47□□□□□ -1.37
LIMCH1-218ENST00000513024 C1orf229Q6ZS94 237 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-218ENST00000513024 FAM19A1Q7Z5A9 133 aa6.47□□□□□ -1.37
LIMCH1-218ENST00000513024 A0A087WZ39 114 aa6.46□□□□□ -1.37
LIMCH1-218ENST00000513024 LINC00467Q9BRT7 94 aa6.46□□□□□ -1.38
LIMCH1-218ENST00000513024 SETD2Q9BYW2 2564 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-218ENST00000513024 CCDC140Q96MF4 163 aa6.46□□□□□ -1.38
LIMCH1-218ENST00000513024 MDFIQ99750 246 aa6.46□□□□□ -1.38
LIMCH1-218ENST00000513024 TLN2Q9Y4G6 2542 aa6.46□□□□□ -1.38
LIMCH1-218ENST00000513024 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 DHRS4-AS1Q9P1J3 65 aa6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 TRBV10-3A0A0K0K1G6 114 aa6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 DEFB131BA0A096LNP1 70 aa6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 ZNF73O43830 326 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 DCANP1Q8TF63 244 aa6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 XAGE1AQ9HD64 81 aa6.45□□□□□ -1.38
LIMCH1-218ENST00000513024 PRM2P04554 102 aa6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 Q6ZTI0 123 aa6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 RNF185Q96GF1 192 aa6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 PRO0255Q9UI72 69 aa6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 LINC01547P58512 204 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 SPINT4Q6UDR6 99 aa6.44□□□□□ -1.38
LIMCH1-218ENST00000513024 PCOTHQ58A44 107 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 Q6ZVQ6 151 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 C19orf84I3L1E1 186 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 BCE1O60756 84 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 LINC00310P59036 64 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 REG3AQ06141 175 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 LINC00482Q8N8I6 264 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 LINC00846Q9NV44 126 aa6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 A6NDX4 124 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms