RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 LINC00643Q86TS7 51 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 RNASE8Q8TDE3 154 aaKnown RBP3.05□□□□□ -1.92
VCAN-209ENST00000513016 NOTCH2Q04721 2471 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 NACAE9PAV3 2078 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 CHD3Q12873 2000 aaKnown RBP3.05□□□□□ -1.92
VCAN-209ENST00000513016 J3QL48 77 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 A0A1B0GUV1 79 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 C16orf90A8MZG2 172 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 PRYO14603 147 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 Q6ZPA2 131 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 NUP210LQ5VU65 1888 aa3.05□□□□□ -1.92
VCAN-209ENST00000513016 CSDC2Q9Y534 153 aaKnown RBP3.05□□□□□ -1.92
VCAN-209ENST00000513016 IGLV2-11P01706 119 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 EDN2P20800 178 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 ALPK3Q96L96 1907 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 MUC22E2RYF6 1773 aaPredicted RBP3.04□□□□□ -1.92
VCAN-209ENST00000513016 LINC00526Q96FQ7 95 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 NDUFC2-KCTD14E9PQ53 114 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 FXYD2P54710 66 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 TEX49A0A1B0GTD5 131 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 PRR9Q5T870 116 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 Q6ZQY7 126 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 MED13LQ71F56 2210 aa3.04□□□□□ -1.92
VCAN-209ENST00000513016 PRRC2AP48634 2157 aaKnown RBP3.04□□□□□ -1.92
VCAN-209ENST00000513016 UNQ6190/PRO20217Q6UXQ8 127 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 Q6ZVQ6 151 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 Q8N9L7 120 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 ANKHD1Q8IWZ3 2542 aaKnown RBP3.03□□□□□ -1.92
VCAN-209ENST00000513016 WFDC10BQ8IUB3 73 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 NRACQ8N912 160 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 TNRC6AQ8NDV7 1962 aaKnown RBP3.03□□□□□ -1.92
VCAN-209ENST00000513016 COX6A2Q02221 97 aa3.03□□□□□ -1.92
VCAN-209ENST00000513016 PIEZO1Q92508 2521 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 NUPR1O60356 82 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 C11orf21Q9P2W6 132 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 PCDH15Q96QU1 1955 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 CEP192Q8TEP8 1941 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 FREM1Q5H8C1 2179 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 NDUFV3P56181 108 aaKnown RBP3.02□□□□□ -1.93
VCAN-209ENST00000513016 TTTY13Q9BZ97 58 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 TAX1BP3O14907 124 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 CNFNQ9BYD5 112 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 ZNF106Q9H2Y7 1883 aaKnown RBP3.02□□□□□ -1.93
VCAN-209ENST00000513016 NOTCH3Q9UM47 2321 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 C3orf22Q8N5N4 141 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 TP73-AS1Q9UF72 201 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 BDP1A6H8Y1 2624 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 A0A0U1RQV1 116 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 NBDYA0A0U1RRE5 68 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 MRPS12O15235 138 aaKnown RBP3.02□□□□□ -1.93
VCAN-209ENST00000513016 SBSPONQ8IVN8 264 aa3.02□□□□□ -1.93
VCAN-209ENST00000513016 LRP4O75096 1905 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 LINC00242Q5T6M2 205 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 SLPIP03973 132 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 PRM2P04554 102 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 C9orf116Q5BN46 136 aaPredicted RBP3.01□□□□□ -1.93
VCAN-209ENST00000513016 TNCP24821 2201 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 Q9BRP9 147 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 SMIM11BQ8TCY0 68 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 KIF25-AS1Q9Y6Z4 181 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 TNRC6BQ9UPQ9 1833 aaKnown RBP3.01□□□□□ -1.93
VCAN-209ENST00000513016 LINC00336Q6ZUF6 198 aa3.01□□□□□ -1.93
VCAN-209ENST00000513016 Q6ZRP5 223 aa3□□□□□ -1.93
VCAN-209ENST00000513016 CSPG4Q6UVK1 2322 aa3□□□□□ -1.93
VCAN-209ENST00000513016 IGLV4-60A0A075B6I1 120 aa3□□□□□ -1.93
VCAN-209ENST00000513016 FAM236AA0A1B0GUQ0 79 aa3□□□□□ -1.93
VCAN-209ENST00000513016 FAM236BA0A1B0GV22 79 aa3□□□□□ -1.93
VCAN-209ENST00000513016 COX8CQ7Z4L0 72 aa3□□□□□ -1.93
VCAN-209ENST00000513016 NAV3Q8IVL0 2385 aa3□□□□□ -1.93
VCAN-209ENST00000513016 MPLKIPQ8TAP9 179 aa3□□□□□ -1.93
VCAN-209ENST00000513016 WFDC13Q8IUB5 93 aa3□□□□□ -1.93
VCAN-209ENST00000513016 PTPN13Q12923 2485 aa3□□□□□ -1.93
VCAN-209ENST00000513016 NAV2Q8IVL1 2488 aa3□□□□□ -1.93
VCAN-209ENST00000513016 FAM240AA0A1B0GVK7 77 aa3□□□□□ -1.93
VCAN-209ENST00000513016 ARHGAP21Q5T5U3 1957 aa3□□□□□ -1.93
VCAN-209ENST00000513016 XGP55808 180 aa3□□□□□ -1.93
VCAN-209ENST00000513016 MED12LQ86YW9 2145 aa3□□□□□ -1.93
VCAN-209ENST00000513016 TRBV10-3A0A0K0K1G6 114 aa3□□□□□ -1.93
VCAN-209ENST00000513016 RTL8CO15255 209 aa3□□□□□ -1.93
VCAN-209ENST00000513016 CRYGAP11844 174 aa3□□□□□ -1.93
VCAN-209ENST00000513016 SMIM1B2RUZ4 78 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 ESRGQ1W209 222 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 SHANK1Q9Y566 2161 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 IGIPA6NJ69 53 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 NDUFC1O43677 76 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 PLCE1Q9P212 2302 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 WFDC2Q14508 124 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 SCXQ7RTU7 201 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 NCOA6Q14686 2063 aaPredicted RBP2.99□□□□□ -1.93
VCAN-209ENST00000513016 Q6ZRU5 148 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 SMCR5Q8TEV8 140 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 CELA1Q9UNI1 258 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 C22orf24Q9Y442 160 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 TRIAP1O43715 76 aa2.99□□□□□ -1.93
VCAN-209ENST00000513016 ATP5EP56381 51 aaPredicted RBP2.98□□□□□ -1.93
VCAN-209ENST00000513016 LINC00315P59091 139 aa2.98□□□□□ -1.93
VCAN-209ENST00000513016 FAM19A3Q7Z5A8 133 aa2.98□□□□□ -1.93
VCAN-209ENST00000513016 RPL37AP61513 92 aaKnown RBP2.98□□□□□ -1.93
VCAN-209ENST00000513016 SPG11Q96JI7 2443 aa2.98□□□□□ -1.93
VCAN-209ENST00000513016 PCNX3Q9H6A9 2034 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms