RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CYSRT1A8MQ03 144 aa8.19□□□□□ -1.1
LIMCH1-217ENST00000512946 GTF3C1Q12789 2109 aa8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 ZFP36P26651 326 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 SIP14410 1827 aa8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 C4orf26Q17RF5 130 aa8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 J3QKU1 62 aa8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 PCOTHQ58A44 107 aa8.18□□□□□ -1.1
LIMCH1-217ENST00000512946 OBSL1O75147 1896 aa8.17□□□□□ -1.1
LIMCH1-217ENST00000512946 A0A0C4DFX4 3053 aa8.17□□□□□ -1.1
LIMCH1-217ENST00000512946 DEFB4AO15263 64 aa8.17□□□□□ -1.1
LIMCH1-217ENST00000512946 ZNF843Q8N446 348 aa8.17□□□□□ -1.1
LIMCH1-217ENST00000512946 PLA2G2CQ5R387 149 aa8.17□□□□□ -1.1
LIMCH1-217ENST00000512946 LAMA2P24043 3122 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-217ENST00000512946 DNAJC9-AS1A6NH13 148 aa8.16□□□□□ -1.1
LIMCH1-217ENST00000512946 RANBP2P49792 3224 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-217ENST00000512946 ERC2-IT1O76042 136 aa8.16□□□□□ -1.1
LIMCH1-217ENST00000512946 LOC100131303A0A0U1RQF7 123 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 C11orf21Q9P2W6 132 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 RPL37AP8A6NKH3 93 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 PLXNA2O75051 1894 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 WDR90Q96KV7 1748 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 REG3GQ6UW15 175 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 TSC2P49815 1807 aa8.15□□□□□ -1.1
LIMCH1-217ENST00000512946 Q6ZTC4 211 aa8.15□□□□□ -1.11
LIMCH1-217ENST00000512946 Q6ZPA2 131 aa8.14□□□□□ -1.11
LIMCH1-217ENST00000512946 C2orf48Q96LS8 159 aa8.14□□□□□ -1.11
LIMCH1-217ENST00000512946 PIP4P1Q86T03 277 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 SBSPONQ8IVN8 264 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 BBC3Q96PG8 261 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 IGHV6-1A0A0B4J1U7 121 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 PROK1P58294 105 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 Q6YL49 198 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 LAMA3Q16787 3333 aa8.13□□□□□ -1.11
LIMCH1-217ENST00000512946 LMO4P61968 165 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 PCNX1Q96RV3 2341 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 IGLV9-49A0A0B4J1Y8 123 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 WDR81Q562E7 1941 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 TSPEAR-AS2P59090 65 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 A0A087WSZ3 146 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 TTC28Q96AY4 2481 aa8.12□□□□□ -1.11
LIMCH1-217ENST00000512946 KPRPQ5T749 579 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-217ENST00000512946 ATP11AUNQ6ZP68 121 aa8.11□□□□□ -1.11
LIMCH1-217ENST00000512946 TCF20Q9UGU0 1960 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-217ENST00000512946 ADAMTSL4-AS1Q5T5F5 129 aa8.11□□□□□ -1.11
LIMCH1-217ENST00000512946 NHLRC4P0CG21 123 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 CRIP3Q6Q6R5 217 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 Q8N2B8 174 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 RLFQ13129 1914 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 ZSWIM8A7E2V4 1837 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 A0A1B0GUV1 79 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 UNQ6190/PRO20217Q6UXQ8 127 aa8.1□□□□□ -1.11
LIMCH1-217ENST00000512946 IGLV2-18A0A075B6J9 118 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 PRR9Q5T870 116 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 Q9BRP9 147 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 A0A096LNJ9 63 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 PRO0461Q9UI25 63 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 HTTP42858 3142 aa8.09□□□□□ -1.11
LIMCH1-217ENST00000512946 SPINT4Q6UDR6 99 aa8.08□□□□□ -1.12
LIMCH1-217ENST00000512946 MED13LQ71F56 2210 aa8.08□□□□□ -1.12
LIMCH1-217ENST00000512946 GRNP28799 593 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-217ENST00000512946 LINC01546A6NGU7 62 aa8.08□□□□□ -1.12
LIMCH1-217ENST00000512946 MSMPQ1L6U9 139 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 LOC110117498A0A087WWA1 95 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 TICRRQ7Z2Z1 1910 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 GAS8-AS1O95177 125 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 LINC00482Q8N8I6 264 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 WNK1Q9H4A3 2382 aa8.07□□□□□ -1.12
LIMCH1-217ENST00000512946 SMIM29Q86T20 159 aa8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 LCA10Q71F78 164 aa8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 BRI3O95415 125 aa8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 C1orf229Q6ZS94 237 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 FREM1Q5H8C1 2179 aa8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 C11orf72Q8NBR9 251 aa8.06□□□□□ -1.12
LIMCH1-217ENST00000512946 ADORA2A-AS1P86434 159 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 Q6ZSV7 163 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 ARHGAP21Q5T5U3 1957 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 ARHGAP32A7KAX9 2087 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 ELOF1P60002 83 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 SORL1Q92673 2214 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 SPINK1P00995 79 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 SPATA3Q8NHX4 192 aa8.05□□□□□ -1.12
LIMCH1-217ENST00000512946 OXLD1Q5BKU9 147 aa8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 C6orf48Q9UBA6 75 aa8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 IGLV5-39A0A0G2JS06 123 aa8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 IGLV1-40P01703 118 aa8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 SMCPP49901 116 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 PLXNB1O43157 2135 aa8.04□□□□□ -1.12
LIMCH1-217ENST00000512946 X6R8D5 127 aa8.03□□□□□ -1.12
LIMCH1-217ENST00000512946 C7orf65Q6ZTY9 151 aa8.03□□□□□ -1.12
LIMCH1-217ENST00000512946 KTN1-AS1Q86SY8 53 aa8.02□□□□□ -1.12
LIMCH1-217ENST00000512946 LINC00337Q8N6G1 96 aa8.02□□□□□ -1.12
LIMCH1-217ENST00000512946 TRAV22A0A0B4J277 110 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 NBASA2RRP1 2371 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 COX6A2Q02221 97 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 ZNF580Q9UK33 172 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 HELZP42694 1942 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 CUL9Q8IWT3 2517 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 VWA8A3KMH1 1905 aa8.02□□□□□ -1.13
LIMCH1-217ENST00000512946 MED12LQ86YW9 2145 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms