RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PSCAO43653 123 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 NDUFB1O75438 58 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 ARMS2P0C7Q2 107 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 BAALC-AS2P0C853 105 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 SAA2P0DJI9 122 aaPredicted RBP1.04□□□□□ -2.24
NUP54-208ENST00000508604 IAPPP10997 89 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 RPL28P46779 137 aaKnown RBP1.04□□□□□ -2.24
NUP54-208ENST00000508604 TSPEAR-AS2P59090 65 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 FXYD4P59646 89 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 ELOF1P60002 83 aaKnown RBP1.04□□□□□ -2.24
NUP54-208ENST00000508604 TFF3Q07654 80 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 CASC2Q6XLA1 102 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 ZNF833PQ6ZTB9 187 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 Q8IYB0 196 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 SPTSSBQ8NFR3 76 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 RETNLBQ9BQ08 111 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 UBL5Q9BZL1 73 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 LINC00574Q9H8X3 128 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 CDC42SE2Q9NRR3 84 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 LINC00846Q9NV44 126 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 TMEM14CQ9P0S9 112 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 MUC22E2RYF6 1773 aaPredicted RBP1.03□□□□□ -2.24
NUP54-208ENST00000508604 IGHV5-10-1A0A0J9YXX1 117 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 A0A1B0GVX0 72 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 I3L3M4 83 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 M0R3E3 92 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 PLXNB1O43157 2135 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 NDUFA3O95167 84 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-30-3P0DP02 117 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 SPTBP11277 2137 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 CCL5P13501 91 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 ZNF137PP52743 207 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 PDE6HQ13956 83 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 DEFB106AQ8N104 65 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 Q8N814 137 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 C1orf64Q8NEQ6 169 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 B9D2Q9BPU9 175 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 CNFNQ9BYD5 112 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 SND1-IT1Q9HBX3 110 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 SNURFQ9Y675 71 aa1.03□□□□□ -2.24
NUP54-208ENST00000508604 CEP192Q8TEP8 1941 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 DSCAMO60469 2012 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 GOLGA4Q13439 2230 aaKnown RBP1.02□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-74A0A0B4J1X5 117 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-43A0A0B4J1X8 118 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 A6NED7 52 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 H0YGX0 51 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 H7C2G1 150 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 M0R1W7 72 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 CCL22O00626 93 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 IGLV1-51P01701 117 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 CCL3P10147 92 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 CD24P25063 80 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 ROMO1P60602 79 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 NREPQ16612 68 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 MIAQ16674 131 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 C10orf128Q5T292 105 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 FAM74A4Q5TZK3 123 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 ENHOQ6UWT2 76 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 ZFAND2AQ8N6M9 145 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 AMELXQ99217 191 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 Q9BRP9 147 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 MRPL36Q9P0J6 103 aaKnown RBP1.02□□□□□ -2.25
NUP54-208ENST00000508604 C22orf24Q9Y442 160 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 COL27A1Q8IZC6 1860 aaPredicted RBP1.02□□□□□ -2.25
NUP54-208ENST00000508604 MYO7BQ6PIF6 2116 aa1.02□□□□□ -2.25
NUP54-208ENST00000508604 COL4A1P02462 1669 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 FREM3P0C091 2139 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 COL4A2P08572 1712 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGLV11-55A0A075B6I3 123 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 LCE6AA0A183 80 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 C10orf142B7Z368 130 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 H3BQ85 93 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 LY6HO94772 140 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGKV1-39P01597 117 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGLV3-1P01715 115 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-11P01762 117 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 CRPP02741 224 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGKV1D-39P04432 117 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 MSMBP08118 114 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 DEFA4P12838 97 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 PDE6GP18545 87 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 LYZL1Q6UWQ5 148 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 CNEP1R1Q8N9A8 125 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 SPANXA2-OT1Q8N9U9 137 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 CAMK2N2Q96S95 79 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 S4R3C0 116 aa1.01□□□□□ -2.25
NUP54-208ENST00000508604 TNRC6BQ9UPQ9 1833 aaKnown RBP1.01□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-21A0A0B4J1V1 117 aa1□□□□□ -2.25
NUP54-208ENST00000508604 TRAV12-3A0A0B4J271 114 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGKV1-6A0A0C4DH72 117 aa1□□□□□ -2.25
NUP54-208ENST00000508604 TRBV6-5A0A0K0K1A5 114 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CXorf51AA0A1B0GTR3 108 aa1□□□□□ -2.25
NUP54-208ENST00000508604 BPY2O14599 106 aa1□□□□□ -2.25
NUP54-208ENST00000508604 LHBP01229 141 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGLV3-25P01717 112 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGHV1-69P01742 117 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CTSGP08311 255 aa1□□□□□ -2.25
NUP54-208ENST00000508604 DEFB114Q30KQ6 69 aa1□□□□□ -2.25
NUP54-208ENST00000508604 C1orf134Q5TEV5 83 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms