RNA–Protein interactions for RNA: ENST00000505886.5

PDLIM3-206, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4

Gene PDLIM3, Length 571 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-206ENST00000505886 ALKBH7Q9BT30 221 aaPredicted RBP10.01□□□□□ -0.81
PDLIM3-206ENST00000505886 IGLV4-3A0A075B6K6 122 aa10□□□□□ -0.81
PDLIM3-206ENST00000505886 TGIF2-C20orf24A0A0A6YYL0 155 aa10□□□□□ -0.81
PDLIM3-206ENST00000505886 SLPIP03973 132 aa10□□□□□ -0.81
PDLIM3-206ENST00000505886 FAM104AQ969W3 186 aa10□□□□□ -0.81
PDLIM3-206ENST00000505886 VCX2Q9H322 139 aa10□□□□□ -0.81
PDLIM3-206ENST00000505886 IGIPA6NJ69 53 aa9.99□□□□□ -0.81
PDLIM3-206ENST00000505886 FABP9Q0Z7S8 132 aa9.99□□□□□ -0.81
PDLIM3-206ENST00000505886 HIGD2BQ4VC39 106 aa9.99□□□□□ -0.81
PDLIM3-206ENST00000505886 TOMM6Q96B49 74 aa9.99□□□□□ -0.81
PDLIM3-206ENST00000505886 MRPL18Q9H0U6 180 aaKnown RBP9.99□□□□□ -0.81
PDLIM3-206ENST00000505886 SMR3BP02814 79 aaPredicted RBP9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 SYCNQ0VAF6 134 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 RNASE13Q5GAN3 156 aaKnown RBP9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 ERASQ7Z444 233 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 FAM19A3Q7Z5A8 133 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 LINC00528Q8N1L1 170 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 CARD19Q96LW7 228 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 AMELXQ99217 191 aa9.98□□□□□ -0.81
PDLIM3-206ENST00000505886 IGLV4-69A0A075B6H9 119 aa9.97□□□□□ -0.81
PDLIM3-206ENST00000505886 A0A087WZ39 114 aa9.97□□□□□ -0.81
PDLIM3-206ENST00000505886 RNF151Q2KHN1 245 aa9.97□□□□□ -0.81
PDLIM3-206ENST00000505886 KIAA1644Q3SXP7 199 aa9.97□□□□□ -0.81
PDLIM3-206ENST00000505886 INAFM2P0DMQ5 153 aa9.96□□□□□ -0.82
PDLIM3-206ENST00000505886 SPACA4Q8TDM5 124 aa9.96□□□□□ -0.82
PDLIM3-206ENST00000505886 SMCO4Q9NRQ5 59 aa9.96□□□□□ -0.82
PDLIM3-206ENST00000505886 TRAPPC1Q9Y5R8 145 aa9.96□□□□□ -0.82
PDLIM3-206ENST00000505886 UBE2D1P51668 147 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 RAB5BP61020 215 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 LINC00242Q5T6M2 205 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 FA2HQ7L5A8 372 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 C5orf38Q86SI9 138 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 DPH3Q96FX2 82 aa9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 OPRPNQ99935 248 aaPredicted RBP9.95□□□□□ -0.82
PDLIM3-206ENST00000505886 HERVK_113P63121 156 aa9.94□□□□□ -0.82
PDLIM3-206ENST00000505886 COX6A2Q02221 97 aa9.94□□□□□ -0.82
PDLIM3-206ENST00000505886 CAMK2N2Q96S95 79 aa9.94□□□□□ -0.82
PDLIM3-206ENST00000505886 PLAC8Q9NZF1 115 aa9.94□□□□□ -0.82
PDLIM3-206ENST00000505886 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.94□□□□□ -0.82
PDLIM3-206ENST00000505886 HAMPP81172 84 aa9.93□□□□□ -0.82
PDLIM3-206ENST00000505886 SPAG11BQ08648 103 aa9.93□□□□□ -0.82
PDLIM3-206ENST00000505886 SCGB3A1Q96QR1 104 aa9.93□□□□□ -0.82
PDLIM3-206ENST00000505886 MRPL35Q9NZE8 188 aaKnown RBP9.93□□□□□ -0.82
PDLIM3-206ENST00000505886 LOC107984640A0A0U1RRK4 108 aa9.92□□□□□ -0.82
PDLIM3-206ENST00000505886 ORAOV1Q8WV07 137 aa9.92□□□□□ -0.82
PDLIM3-206ENST00000505886 NDUFA1O15239 70 aa9.91□□□□□ -0.82
PDLIM3-206ENST00000505886 LINC00614P0C842 121 aa9.91□□□□□ -0.82
PDLIM3-206ENST00000505886 A0A087WYN8 130 aa9.9□□□□□ -0.82
PDLIM3-206ENST00000505886 LINC00173Q6ZV60 143 aa9.9□□□□□ -0.82
PDLIM3-206ENST00000505886 C7orf33Q8WU49 177 aa9.9□□□□□ -0.82
PDLIM3-206ENST00000505886 GEMIN7Q9H840 131 aaKnown RBP9.9□□□□□ -0.82
PDLIM3-206ENST00000505886 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.89□□□□□ -0.83
PDLIM3-206ENST00000505886 C18orf32Q8TCD1 76 aa9.89□□□□□ -0.83
PDLIM3-206ENST00000505886 YPEL4Q96NS1 127 aa9.89□□□□□ -0.83
PDLIM3-206ENST00000505886 TRBV30A0A0K0K1B3 111 aa9.88□□□□□ -0.83
PDLIM3-206ENST00000505886 TINCRA0A1B0GVN0 87 aa9.88□□□□□ -0.83
PDLIM3-206ENST00000505886 TLX1NBP0CAT3 122 aa9.88□□□□□ -0.83
PDLIM3-206ENST00000505886 MAJINQ3KP22 176 aa9.88□□□□□ -0.83
PDLIM3-206ENST00000505886 Q6ZRU5 148 aa9.88□□□□□ -0.83
PDLIM3-206ENST00000505886 ABCA13Q86UQ4 5058 aa9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 PANO1I0J062 215 aa9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 PTTG1IPP53801 180 aa9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 RPL37AP61513 92 aaKnown RBP9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 PMVKQ15126 192 aa9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 PACRGQ96M98 296 aaPredicted RBP9.87□□□□□ -0.83
PDLIM3-206ENST00000505886 A0A096LNI7 61 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 HBDP02042 147 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 PRSS2P07478 247 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 CXCL5P42830 114 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 Q8IZM0 81 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 STPG4Q8N801 248 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 CHCHD1Q96BP2 118 aaKnown RBP9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 LINC00526Q96FQ7 95 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 CST9LQ9H4G1 147 aa9.86□□□□□ -0.83
PDLIM3-206ENST00000505886 IGLV5-45A0A087WSX0 123 aa9.85□□□□□ -0.83
PDLIM3-206ENST00000505886 IGKV2-24A0A0C4DH68 120 aa9.85□□□□□ -0.83
PDLIM3-206ENST00000505886 ATP5LO75964 103 aa9.85□□□□□ -0.83
PDLIM3-206ENST00000505886 KIAA0087Q14695 138 aa9.85□□□□□ -0.83
PDLIM3-206ENST00000505886 DNAH8Q96JB1 4490 aa9.85□□□□□ -0.83
PDLIM3-206ENST00000505886 SRRM2Q9UQ35 2752 aaKnown RBP9.84□□□□□ -0.83
PDLIM3-206ENST00000505886 CHTF8P0CG12 524 aa9.84□□□□□ -0.83
PDLIM3-206ENST00000505886 ODF1Q14990 250 aa9.84□□□□□ -0.83
PDLIM3-206ENST00000505886 H3BRM9 83 aa9.83□□□□□ -0.84
PDLIM3-206ENST00000505886 KRTAP10-4P60372 401 aaPredicted RBP9.83□□□□□ -0.84
PDLIM3-206ENST00000505886 CKS1BP61024 79 aa9.83□□□□□ -0.84
PDLIM3-206ENST00000505886 PDZD11Q5EBL8 140 aa9.83□□□□□ -0.84
PDLIM3-206ENST00000505886 C6orf226Q5I0X4 101 aa9.83□□□□□ -0.84
PDLIM3-206ENST00000505886 CDKN2A-AS1Q9UH64 79 aa9.82□□□□□ -0.84
PDLIM3-206ENST00000505886 GAGE2BQ13066 116 aa9.81□□□□□ -0.84
PDLIM3-206ENST00000505886 LINC00469Q8N7U9 141 aa9.81□□□□□ -0.84
PDLIM3-206ENST00000505886 FAT1Q14517 4588 aa9.81□□□□□ -0.84
PDLIM3-206ENST00000505886 A0A0J9YXV3 536 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 NDUFC2-KCTD14E9PQ53 114 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 F8VRH5 84 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 RPL18AQ02543 176 aaKnown RBP9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 SFTA2Q6UW10 78 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 UNQ6190/PRO20217Q6UXQ8 127 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 CBLN2Q8IUK8 224 aa9.8□□□□□ -0.84
PDLIM3-206ENST00000505886 A0A096LNJ9 63 aa9.79□□□□□ -0.84
PDLIM3-206ENST00000505886 OXTP01178 125 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms