RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PTPRFP10586 1907 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 ZNF142P52746 1687 aaPredicted RBP4.33□□□□□ -1.72
USF3-204ENST00000496826 A0A0J9YX75 114 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 RUSC1-AS1Q66K80 236 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 RIF1Q5UIP0 2472 aaKnown RBP4.33□□□□□ -1.72
USF3-204ENST00000496826 APLNQ9ULZ1 77 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 PEAK1Q9H792 1746 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 LINC01600Q96MT4 127 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 A0A1B0GUL6 1792 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 E7EQL1 145 aa4.33□□□□□ -1.72
USF3-204ENST00000496826 NYNRINQ9P2P1 1898 aaKnown RBP4.33□□□□□ -1.72
USF3-204ENST00000496826 PLXNA4Q9HCM2 1894 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 LCA10Q71F78 164 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 FAM215AQ9Y5M1 114 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 PLXNA2O75051 1894 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 ZNF503-AS2A6NEH8 195 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 MYO18BQ8IUG5 2567 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 IGKV2-28A0A075B6P5 120 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 IGKV2D-28P01615 120 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 SPRR3Q9UBC9 169 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 A8MZ25 164 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 LYNX1G3V0Z9 82 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 LYNX1P0DP58 116 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 FAM19A4Q96LR4 140 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 MARF1Q9Y4F3 1742 aaKnown RBP4.32□□□□□ -1.72
USF3-204ENST00000496826 FOCADQ5VW36 1801 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 PCOTHQ58A44 107 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 DEFB104AQ8WTQ1 72 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 MYO9AB2RTY4 2548 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 A0A087WV48 116 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 DMAC1Q96GE9 116 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 C5P01031 1676 aa4.32□□□□□ -1.72
USF3-204ENST00000496826 CEP192Q8TEP8 1941 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 G3V318 75 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 H3BS24 57 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 KPRPQ5T749 579 aaPredicted RBP4.31□□□□□ -1.72
USF3-204ENST00000496826 ZSWIM8A7E2V4 1837 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 MAP6D1Q9H9H5 199 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 FNDC1Q4ZHG4 1894 aaPredicted RBP4.31□□□□□ -1.72
USF3-204ENST00000496826 FN1P02751 2386 aaKnown RBP4.31□□□□□ -1.72
USF3-204ENST00000496826 RPL39LQ96EH5 51 aaKnown RBP4.31□□□□□ -1.72
USF3-204ENST00000496826 LINC00588Q9Y4M8 146 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 ACANP16112 2415 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 PTPRSQ13332 1948 aa4.31□□□□□ -1.72
USF3-204ENST00000496826 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.31□□□□□ -1.72
USF3-204ENST00000496826 LINC01556Q5JQF7 62 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 IGFL4Q6B9Z1 124 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 MIR22HGQ0VDD5 57 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 H7BZZ5 65 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 NRXN3Q9Y4C0 1643 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 C9orf129Q5T035 196 aaKnown RBP4.3□□□□□ -1.72
USF3-204ENST00000496826 Q8N3U1 123 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 POM121L12Q8N7R1 296 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 UNQ9165/PRO28630Q6UXU0 137 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 PRR15Q8IV56 129 aa4.3□□□□□ -1.72
USF3-204ENST00000496826 IGLV11-55A0A075B6I3 123 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 FXYD2P54710 66 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 Q8NBF4 154 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 TANC1Q9C0D5 1861 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 K7EIM0 57 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 C11orf1Q9H5F2 150 aa4.29□□□□□ -1.72
USF3-204ENST00000496826 C1orf147Q96MC9 270 aaPredicted RBP4.29□□□□□ -1.72
USF3-204ENST00000496826 CHTF8P0CG12 524 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 Q1T7F1 81 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 LINC00114Q6XXX2 140 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 RSPO1Q2MKA7 263 aaPredicted RBP4.28□□□□□ -1.72
USF3-204ENST00000496826 VWCEQ96DN2 955 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 SHANK3Q9BYB0 1731 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 NUP210LQ5VU65 1888 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 IGLV6-57P01721 117 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 C17orf58Q2M2W7 97 aa4.28□□□□□ -1.72
USF3-204ENST00000496826 COX6A2Q02221 97 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 Q6YL49 198 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 U3KQK5 164 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 C2CD3Q4AC94 2353 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 IGLV5-45A0A087WSX0 123 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 TYMSOSQ8TAI1 123 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 Q6ZRP5 223 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.27□□□□□ -1.73
USF3-204ENST00000496826 TNP2Q05952 138 aa4.27□□□□□ -1.73
USF3-204ENST00000496826 FAM167A-AS1Q96KT0 104 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 C9orf116Q5BN46 136 aaPredicted RBP4.26□□□□□ -1.73
USF3-204ENST00000496826 PRR9Q5T870 116 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 PLA2G2DQ9UNK4 145 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 KIF26AQ9ULI4 1882 aaPredicted RBP4.26□□□□□ -1.73
USF3-204ENST00000496826 KIDINS220Q9ULH0 1771 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 A0A087WSZ3 146 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 ZNF80P51504 273 aaPredicted RBP4.26□□□□□ -1.73
USF3-204ENST00000496826 RPL39P62891 51 aaKnown RBP4.26□□□□□ -1.73
USF3-204ENST00000496826 C2orf91Q6ZV80 131 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 LYPD2Q6UXB3 125 aa4.26□□□□□ -1.73
USF3-204ENST00000496826 IGLV2-14P01704 120 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 Q6ZQT0 140 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 SMIM11BQ8TCY0 68 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 ZNRD1Q9P1U0 126 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 ALPK3Q96L96 1907 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 SHISA4Q96DD7 197 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 WIPF1O43516 503 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 C4orf26Q17RF5 130 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 DENND4CQ5VZ89 1909 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms