RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 HSPG2P98160 4391 aa10.64□□□□□ -0.71
SF3A1-209ENST00000496189 IGHV3-64A0A075B6Q5 118 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 COX7A2LO14548 114 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 HIGD2BQ4VC39 106 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 Q6ZSA8 131 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 BAGE3Q86Y29 109 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 C15orf56Q8N910 161 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 CHCHD1Q96BP2 118 aaKnown RBP10.63□□□□□ -0.71
SF3A1-209ENST00000496189 FAM30AQ9NZY2 134 aa10.63□□□□□ -0.71
SF3A1-209ENST00000496189 ZNF561-AS1K7EIQ3 104 aa10.62□□□□□ -0.71
SF3A1-209ENST00000496189 HBDP02042 147 aa10.62□□□□□ -0.71
SF3A1-209ENST00000496189 HAMPP81172 84 aa10.62□□□□□ -0.71
SF3A1-209ENST00000496189 AMELXQ99217 191 aa10.62□□□□□ -0.71
SF3A1-209ENST00000496189 PKIGQ9Y2B9 76 aa10.62□□□□□ -0.71
SF3A1-209ENST00000496189 GVQW2A0A096LPI5 108 aaPredicted RBP10.61□□□□□ -0.71
SF3A1-209ENST00000496189 APOMO95445 188 aa10.61□□□□□ -0.71
SF3A1-209ENST00000496189 SMR3BP02814 79 aaPredicted RBP10.61□□□□□ -0.71
SF3A1-209ENST00000496189 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.6□□□□□ -0.71
SF3A1-209ENST00000496189 ATP6V1G1O75348 118 aa10.6□□□□□ -0.71
SF3A1-209ENST00000496189 SEC11AP67812 179 aa10.6□□□□□ -0.71
SF3A1-209ENST00000496189 Q5VSD8 79 aa10.6□□□□□ -0.71
SF3A1-209ENST00000496189 URB1-AS1Q96HZ7 61 aa10.6□□□□□ -0.71
SF3A1-209ENST00000496189 CHAC1Q9BUX1 264 aa10.6□□□□□ -0.71
SF3A1-209ENST00000496189 UBE2D1P51668 147 aa10.59□□□□□ -0.71
SF3A1-209ENST00000496189 DPH3Q96FX2 82 aa10.59□□□□□ -0.71
SF3A1-209ENST00000496189 HSBP1O75506 76 aa10.58□□□□□ -0.72
SF3A1-209ENST00000496189 ATP5LO75964 103 aa10.58□□□□□ -0.72
SF3A1-209ENST00000496189 LINC00173Q6ZV60 143 aa10.58□□□□□ -0.72
SF3A1-209ENST00000496189 SCXQ7RTU7 201 aa10.58□□□□□ -0.72
SF3A1-209ENST00000496189 C5orf38Q86SI9 138 aa10.58□□□□□ -0.72
SF3A1-209ENST00000496189 IGHV3OR16-9A0A0B4J2B5 98 aa10.57□□□□□ -0.72
SF3A1-209ENST00000496189 PMVKQ15126 192 aa10.57□□□□□ -0.72
SF3A1-209ENST00000496189 PMCHL1Q16048 86 aa10.57□□□□□ -0.72
SF3A1-209ENST00000496189 LINC00242Q5T6M2 205 aa10.57□□□□□ -0.72
SF3A1-209ENST00000496189 ZC2HC1BQ5TFG8 222 aa10.57□□□□□ -0.72
SF3A1-209ENST00000496189 PLA2G1BP04054 148 aaKnown RBP10.56□□□□□ -0.72
SF3A1-209ENST00000496189 GEMIN7Q9H840 131 aaKnown RBP10.56□□□□□ -0.72
SF3A1-209ENST00000496189 A0A096LNJ9 63 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 HERVK_113P63121 156 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 PDZD11Q5EBL8 140 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 SDIM1Q6ZPB5 146 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 FAM19A3Q7Z5A8 133 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 CARD19Q96LW7 228 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 CST9LQ9H4G1 147 aa10.55□□□□□ -0.72
SF3A1-209ENST00000496189 A0A087WZ39 114 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 NDUFA6P56556 154 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 LINC00528Q8N1L1 170 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 OR10D4PQ8NGN7 298 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 CIRBP-AS1Q8TBR5 109 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 KRTAP4-5Q9BYR2 181 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 PCLOQ9Y6V0 5065 aa10.54□□□□□ -0.72
SF3A1-209ENST00000496189 SLPIP03973 132 aa10.53□□□□□ -0.72
SF3A1-209ENST00000496189 COX6A2Q02221 97 aa10.53□□□□□ -0.72
SF3A1-209ENST00000496189 SYCNQ0VAF6 134 aa10.53□□□□□ -0.72
SF3A1-209ENST00000496189 LINC01561Q8N1V8 128 aa10.53□□□□□ -0.72
SF3A1-209ENST00000496189 SERF1AO75920 110 aa10.52□□□□□ -0.73
SF3A1-209ENST00000496189 ORAOV1Q8WV07 137 aa10.52□□□□□ -0.73
SF3A1-209ENST00000496189 CAMK2N2Q96S95 79 aa10.52□□□□□ -0.73
SF3A1-209ENST00000496189 IGLV4-69A0A075B6H9 119 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 A0A0J9YXV3 536 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 TINCRA0A1B0GVN0 87 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 SPAG11BQ08648 103 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 LINC00526Q96FQ7 95 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 PACRGQ96M98 296 aaPredicted RBP10.51□□□□□ -0.73
SF3A1-209ENST00000496189 LINC00474Q9P2X8 69 aa10.51□□□□□ -0.73
SF3A1-209ENST00000496189 DNAH8Q96JB1 4490 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 F8WDY8 70 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 INAFM2P0DMQ5 153 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 FAM19A2Q8N3H0 131 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 C2orf48Q96LS8 159 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 KRTAP17-1Q9BYP8 105 aa10.5□□□□□ -0.73
SF3A1-209ENST00000496189 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.5□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BKO60814 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BJP06899 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BOP23527 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BBP33778 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BDP58876 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BCP62807 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST2H2BEQ16778 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-209ENST00000496189 LINC00469Q8N7U9 141 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BHQ93079 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 IFI27L1Q96BM0 104 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BNQ99877 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 HIST1H2BMQ99879 126 aa10.49□□□□□ -0.73
SF3A1-209ENST00000496189 ABCA13Q86UQ4 5058 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 IGKV2-24A0A0C4DH68 120 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 LEPROTL1O95214 131 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 MAJINQ3KP22 176 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 CDKN2A-AS1Q9UH64 79 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 HSPB8Q9UJY1 196 aa10.48□□□□□ -0.73
SF3A1-209ENST00000496189 LOC107984640A0A0U1RRK4 108 aa10.47□□□□□ -0.73
SF3A1-209ENST00000496189 H3BRM9 83 aa10.47□□□□□ -0.73
SF3A1-209ENST00000496189 PRSS2P07478 247 aa10.47□□□□□ -0.73
SF3A1-209ENST00000496189 CIRBPQ14011 172 aaKnown RBP10.47□□□□□ -0.73
SF3A1-209ENST00000496189 SPACA4Q8TDM5 124 aa10.47□□□□□ -0.73
SF3A1-209ENST00000496189 NDUFA1O15239 70 aa10.46□□□□□ -0.73
SF3A1-209ENST00000496189 CHTF8P0CG12 524 aa10.46□□□□□ -0.73
SF3A1-209ENST00000496189 LINC00310P59036 64 aa10.46□□□□□ -0.73
SF3A1-209ENST00000496189 IGLV5-45A0A087WSX0 123 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms